Cmar018744.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000043.1:415093-417742[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 6.6 4.9e+02 1.8 0.1 7 20 131 144 131 144 0.95 2 23 0.098 7.3 7.5 2.5 1 23 143 165 143 165 0.97 3 23 0.0018 0.14 13.0 1.2 1 23 173 196 173 196 0.97 4 23 0.00038 0.028 15.1 1.0 2 23 203 225 202 225 0.94 5 23 0.035 2.6 8.9 0.1 2 23 228 249 227 249 0.95 6 23 2.8e-07 2.1e-05 25.0 1.4 1 23 255 277 255 277 0.99 7 23 0.00032 0.024 15.3 1.7 1 23 285 308 285 308 0.96 8 23 0.31 23 5.9 1.3 2 23 315 337 314 337 0.94 9 23 4e-05 0.003 18.2 0.5 2 23 344 366 343 366 0.93 10 23 0.00018 0.014 16.1 0.2 2 23 369 390 368 390 0.96 11 23 3e-07 2.2e-05 24.8 1.4 1 23 396 418 396 418 0.99 12 23 0.00022 0.016 15.8 0.4 1 23 428 451 428 451 0.95 13 23 0.0026 0.19 12.5 3.8 1 23 457 480 457 480 0.95 14 23 1.5e-05 0.0011 19.5 0.9 2 23 483 504 482 504 0.96 15 23 0.012 0.91 10.3 2.9 1 23 510 531 510 531 0.88 16 23 0.0033 0.25 12.1 2.1 1 23 541 564 541 564 0.97 17 23 0.0009 0.067 13.9 0.5 2 21 571 590 570 591 0.92 18 23 0.038 2.8 8.8 0.5 2 23 596 617 595 617 0.89 19 23 0.0041 0.3 11.8 1.3 1 23 623 644 623 644 0.84 20 23 0.001 0.074 13.8 2.9 1 23 654 677 654 677 0.95 21 23 2.6e-05 0.0019 18.8 0.8 2 23 684 706 683 706 0.94 22 23 3.3e-06 0.00024 21.6 0.3 2 23 709 730 708 730 0.96 23 23 0.00035 0.026 15.2 1.7 1 23 735 760 735 760 0.95
Sequence Information
- Coding Sequence
- ATGATTAATTCTGTCTTGCAAGTTCACTTTTCATTGGATGGAACAGGATCAGATTTTATGTGTTCAaaatgtgaaaacattttaaatgattctcATCAGTCCAAgttcaaaataaatgataaattgaagtGTTATGAGAAGTTTagtaataaaaaagttgacaATGTCCGCATTGAACTATCAGTTCCAATACActacaatttcattaaagttgaagatgaattgAATATATCAACGGAGATGGAGTTGGTTTCACCAATGAATGAAGTCAAAGAAGAAAGTTCTGAAGATGAAAGTCTAAAGGATCATGATGAAGTTAAGAATGAAGAGGaaaatgaacttgaaaatcaGGATCAGTCAAATCCTCAATTCATTTTATGCGATGCtggtggaaaagtttttaaaaatgatcaCTCGGTCAAGCGACATCAGTGCGACATTTGTGGATTAACAGCGACATGtaaattcaacatttcttctcACATGAACACGCATAAAGAATTTAGGACAAAGGATTTTCAGTGTCAAATTTGTGGGAACTCttactttaataaaaatgtgcTTCGATatcatattttgaaaaatcatgaaaaaccAAAGCACCTTACCTGTTCATTATGTAGCAGAACATTTAGAACTGAAGAAggtttaaaaaatcataagtCACGTCCTCATCGTTTACCTTGTGAGGTCTgtggaaaaatgattttaaacaaTGAACTCAAGCGACATTTAAAAATAGTACACTTCAAAATAAAACCATATCAGTGCGATAATTGTGGTAAGAAATTCAGCAGAAAACAACCTCTGATTAAACACCTGAATACGCACAAAGTTTAtagaacaaaagattttcattgtcaaattTGTGGAAATTCCTATTTTAGAAAAAATGGACTTGAAAGACatatattaattaaacatgaaagACTAAAGCATCTTACTTGTTCAATATGTGAAAGTTCCTTCTATCTTAAAAAATCACTAAGATTTcatatattaaaaaatcacGAAAGATCAGAACTTATTACTTGTTCATTATGTGGAAAGACTTTTAAGTCCGAAGAAGGCTTAAGAAATCATAAGTTAAATCTTCATCGTTTACCTTGCAACGTATgtggaaaaatgatttcaaaggaaaatcttaAGCGACATTTAAATACCAtacatttgaatattaaacCATATCAGtgcgatatttgtggaaaGAAATTCAGTAGCAAGTCAGAGATTGCTCATCACATGATTAAGCATATTGGTTTGGAACATAGAACAAGAGATTATCAATGCGATCTCTGTGAAGCTTCTTTCTTCGATAAAAGTGGACTTCAAACACATACATTATACGTTCATGAAAGACAACAACATCATTACTGTTCATTATGTAACAGAACTTTTAGAACCGAGCAAGGCTTTAAAAATCATAAGTTACGTCCACACCGTTCACCTTGTGAAATTTGTGGGAAATCGTTTAGAAATGATTTACTCAAGCATCATCTAAATATGgttcatttcaatattaaacCATATCAGtgcgatatttgtggaaaGAAATTCTGTAAAGATTATCTTCCACGCCACATGGACACACATATTGGTTTGGAACAcagaacaaaagattttcattgtcaGATTTGTGGAAACTCTTACTTTGATAAACATGGAATTGAAAGACATATATTAACTATTCATGAAAAACCAAAGCATCTTACGTGTTTACTATGTGGGAAAACTTCTAGGAACAAAGAAGAccttaaaaatcataaattacgTCCCTGTCGTTTACCTTGTAAAATctgtggaaaatttattccaacCAAAAGTcttaagaaacatttaaataaggTGCATTACAATAATAAACCTTATCAGtgcgatatttgtggaaaaaaattctgtAAAATATCACTTGCTGGTCACATGATTACACATATTGATTTAGAACACAggacaaaagattttcattgctatatttgtgaaaattctttttttaataaaaaaaatcttcaaacccatattttaaatgttcatgaaaaaCCGAAGCATCTTACCTGTTCATTATGCGGAAGATTTTTCAACAccaaagaaagtttaaaaaatcataagttAATTCCTCATCGTTTGCCAtgtgatatttgtggaaaaCGTTTCGTTTCTAAACGCTCACTACTGCTTCATCAAAATATGcatgaagagagaaaatttgtttgtgatTTTCCTGGATGTCAAAAGAAGCTCAAAACAAAATGTAATCTtaaaaaacacattttaatcGTTCATAAAAAATCCATGAGCCATGTCCTGTTGAAAATGGATGCAAATACTCAGGAGGAAGAAAAGATTCCATGA
- Protein Sequence
- MINSVLQVHFSLDGTGSDFMCSKCENILNDSHQSKFKINDKLKCYEKFSNKKVDNVRIELSVPIHYNFIKVEDELNISTEMELVSPMNEVKEESSEDESLKDHDEVKNEEENELENQDQSNPQFILCDAGGKVFKNDHSVKRHQCDICGLTATCKFNISSHMNTHKEFRTKDFQCQICGNSYFNKNVLRYHILKNHEKPKHLTCSLCSRTFRTEEGLKNHKSRPHRLPCEVCGKMILNNELKRHLKIVHFKIKPYQCDNCGKKFSRKQPLIKHLNTHKVYRTKDFHCQICGNSYFRKNGLERHILIKHERLKHLTCSICESSFYLKKSLRFHILKNHERSELITCSLCGKTFKSEEGLRNHKLNLHRLPCNVCGKMISKENLKRHLNTIHLNIKPYQCDICGKKFSSKSEIAHHMIKHIGLEHRTRDYQCDLCEASFFDKSGLQTHTLYVHERQQHHYCSLCNRTFRTEQGFKNHKLRPHRSPCEICGKSFRNDLLKHHLNMVHFNIKPYQCDICGKKFCKDYLPRHMDTHIGLEHRTKDFHCQICGNSYFDKHGIERHILTIHEKPKHLTCLLCGKTSRNKEDLKNHKLRPCRLPCKICGKFIPTKSLKKHLNKVHYNNKPYQCDICGKKFCKISLAGHMITHIDLEHRTKDFHCYICENSFFNKKNLQTHILNVHEKPKHLTCSLCGRFFNTKESLKNHKLIPHRLPCDICGKRFVSKRSLLLHQNMHEERKFVCDFPGCQKKLKTKCNLKKHILIVHKKSMSHVLLKMDANTQEEEKIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -