Basic Information

Insect: Clunio marinus
Gene Symbol: -
Assembly: GCA_900005825.1
Location: CVRI01000047.1:4543950-4550717[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2.8e-11 7.3e-08 32.5 0.3 3 39 5 40 3 49 0.96

2 10 2.4e-12 6.3e-09 35.9 0.4 3 39 107 141 105 153 0.94

3 10 1.1e-10 3e-07 30.6 0.4 3 39 169 204 167 211 0.95

4 10 1e-09 2.8e-06 27.5 0.4 3 39 272 307 270 314 0.95

5 10 0.18 4.9e+02 1.1 0.7 17 41 686 707 677 710 0.83

6 10 0.92 2.5e+03 -1.1 5.0 5 43 703 738 700 739 0.82

7 10 0.1 2.7e+02 1.9 1.2 12 38 740 763 731 767 0.77

8 10 0.012 33 4.8 0.7 5 29 762 785 758 792 0.83

9 10 0.44 1.2e+03 -0.1 0.5 13 43 827 855 821 856 0.75

10 10 0.1 2.7e+02 1.9 4.2 17 43 863 886 853 887 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2.8e-11	7.3e-08	32.5	0.3	3	39	5	40	3	49	0.96
2	10	2.4e-12	6.3e-09	35.9	0.4	3	39	107	141	105	153	0.94
3	10	1.1e-10	3e-07	30.6	0.4	3	39	169	204	167	211	0.95
4	10	1e-09	2.8e-06	27.5	0.4	3	39	272	307	270	314	0.95
5	10	0.18	4.9e+02	1.1	0.7	17	41	686	707	677	710	0.83
6	10	0.92	2.5e+03	-1.1	5.0	5	43	703	738	700	739	0.82
7	10	0.1	2.7e+02	1.9	1.2	12	38	740	763	731	767	0.77
8	10	0.012	33	4.8	0.7	5	29	762	785	758	792	0.83
9	10	0.44	1.2e+03	-0.1	0.5	13	43	827	855	821	856	0.75
10	10	0.1	2.7e+02	1.9	4.2	17	43	863	886	853	887	0.81

Sequence Information

Coding Sequence: ATGAGGTCGTGGGTTTGGGAACATTTCgttaagaaaagtgaaaatatcgCTACTTGTAAAATATGTGAAAgagatataaaaagaaatgcaTCTTCGACAAAAGCAATGATCAATCATTTGCTTTTACACGACCTGAAAGATCcgatgaagaaacaaaacgaaattgatttcaatgaaGCAAATGATTCCCAGCTTCAAGTCAATTCAACAGACCTTGTAAGTGAGCAGGATTCGCAAGATtctcaaaatgttttgagCTCTTCTGTGGACGGACAATTGACTTATGAGTCAATGTCAGTGAAAATGATGAGGTCGTGGGTTTGGgaacattttcttaaaagtgaaaacatcGCTACTTGTAAAATatgtcaaaaagaaattaaaagaactgCATCTTCGACAACAGCAATGATCAATCATTTGCTTATACACGACCTAACAGAACCGATTGTGAAGCGACAGTTGACTGAAATGCCAAAGCCAGTGAAAAATTTGAGGTCTTGGGTTTGGAAACATTTTGTCAAGACAGGTGAAGATATCGCTACTTGTAAAATTTGTCAAAGAGACATAAAAAGAACTGCATCTTCGACAACAGCAATGAGAAATCATTTGCTTATACACGATCTAAAAGATCCGATGAAGCAACAAAACGAAATTGATATCAACGAAACAAGTTCAACAGACCTTGTAAGTGAGCAAGATTCGCAAGATTCGGAAGATTCAGAAGATTCGCACGATTCTCAAAATGTTTCGAGTTCTTTTGTTAACCGCCGCTTGAGGATGTCAATGtcagtgaaaaataaaaagtcatgGGTTTGGGAACATTTTGTcaagaaagatgaaattatcGCTACTTGTAAAATTTGTCAAAGagacataaaaagaaatgcaTCTTCGACAACAGCAATGAGAAATCATTTGCTTTTACACGACCTGAAAGATCCAATGAAGcagcaaaatgaaatttatgtcaaCGAAGCTTTCAATTTCCAGCTTCAAGCAAATTCAACAAACCTTgACTTCAGCagaaattacataaaaaaggtgaagatgaatgaaatcaaaaaaccagccaaaatgtttaattcaactacaaaagaagaaatgatggctttgaaaaaaaaatatgcgGGCGGAGATACTTTCGATATTAACAATTGTTACTTATGTGATGATCCTCTCGGTCCATATCGTAATAGTTTAATGACTGTTACTGATTACACAAAAACTTTCGTCTATGAGACAATAGAATGTTTCACTGGAAAGCTGATAGAATCACATATGAAGGATGATGCCAATATCTGTCAAAgctgtttcatttcaatccaGAAATATGACGAGCTGCAAAAAGAATctgaaaaaattcaaaacaaaatgatcGAGCTTTATAACAAAACTCAttcgaaaaataaacttaaagtCAAGAAAGAAGATCCTGATTTGGTCCTAGATTTTGAAAACGGGGAAAACAAAGATTGCCTTAAATGTAAAAATTCATTAAGAACTCTTCTAAATCATGATCATTCCTCACctgtgaagaaatttcatattgACTCCTcgaaaatatctgaaaattttaagaaagaagCTCGCAAGAAAGGAATCAATTATAATTATGAAATCTTTCAACGAACTTTCTTTTCTGAGAATGAAATCGATTTACTGAACAAATGTCGATCAACAAGACCAAAACCAGCAGTTGGTGAAAGAAAAGAGCCGAGAGACAAGATTGAAGAATGCAATGAGAAAATATCGACAGAATTCTTGGAGGAAGCAAATAAACAAGGAATTGACTATGGCCTTGAAGCATTTCAACACGCATTTGGATACAATGAAGCAGAATGTTCAAGAcaagataagaaagaaaaaaatgaaaatcaaaaccaGAAACCAAAATTGAACCGAAAAACTGTTGACGAAAGTTTTCTCGAAACTATGGCAGCTAATGGAATAAAACATGGTTTAGATAcgtttcaaaaagcttttggtTCTGATGTTGTCATGAAATCAGAATCAGATAGAGAATTGGAGAAAGAAATTAGAGAGAATGGATACACTGATTGTCCCATTTGTGGATTCCGATTCACTAATCGTACAAGACTTCATCGGCATATGACGTCGCATAGACCAAAAGACAAAGAATTATATTGCGAGAAATGTGCAAGGAgctttaaaaatcaatcaacattACATTTGCATTTAGCCACTGATCATGGAAGAGCGCAAGGATCGGTTGATTGTCCAATTTGTTTCAAGACATATCAAGACACGGCAGCACTCCGAAGTCACTTTTATACTCACACccttgaaagaaatttgctgTGTGGAAAGTGTGGAAAGACATTCGCAcataagaaatcttttgaaatgcATATGCTGGCACATGATGATGTCAGACCATTCCCCTGTACTCATGAAGGATGCTCAAAGAAATTCCGagcgaaaaataaattagtgATACATCTCCGTGTTCATACTGGCGAAAAGATCTTTGAATGTCCGCACTGTCCTGGCAAGCGTTTTTCACAGAAATGGGGAATGGATTTGCACATTAAGaaacaacacaaaaacatTGTCCCGTCATCAGAAGTTTGTCGGATTTGCAATATTAAAATCCAAAATAAATCTAAATTAAGACttcatttaataaacattcatCAAGTTGCTGATGATGCTGACGACAACATTGAAATGAGAATGACTTGA
Protein Sequence: MRSWVWEHFVKKSENIATCKICERDIKRNASSTKAMINHLLLHDLKDPMKKQNEIDFNEANDSQLQVNSTDLVSEQDSQDSQNVLSSSVDGQLTYESMSVKMMRSWVWEHFLKSENIATCKICQKEIKRTASSTTAMINHLLIHDLTEPIVKRQLTEMPKPVKNLRSWVWKHFVKTGEDIATCKICQRDIKRTASSTTAMRNHLLIHDLKDPMKQQNEIDINETSSTDLVSEQDSQDSEDSEDSHDSQNVSSSFVNRRLRMSMSVKNKKSWVWEHFVKKDEIIATCKICQRDIKRNASSTTAMRNHLLLHDLKDPMKQQNEIYVNEAFNFQLQANSTNLDFSRNYIKKVKMNEIKKPAKMFNSTTKEEMMALKKKYAGGDTFDINNCYLCDDPLGPYRNSLMTVTDYTKTFVYETIECFTGKLIESHMKDDANICQSCFISIQKYDELQKESEKIQNKMIELYNKTHSKNKLKVKKEDPDLVLDFENGENKDCLKCKNSLRTLLNHDHSSPVKKFHIDSSKISENFKKEARKKGINYNYEIFQRTFFSENEIDLLNKCRSTRPKPAVGERKEPRDKIEECNEKISTEFLEEANKQGIDYGLEAFQHAFGYNEAECSRQDKKEKNENQNQKPKLNRKTVDESFLETMAANGIKHGLDTFQKAFGSDVVMKSESDRELEKEIRENGYTDCPICGFRFTNRTRLHRHMTSHRPKDKELYCEKCARSFKNQSTLHLHLATDHGRAQGSVDCPICFKTYQDTAALRSHFYTHTLERNLLCGKCGKTFAHKKSFEMHMLAHDDVRPFPCTHEGCSKKFRAKNKLVIHLRVHTGEKIFECPHCPGKRFSQKWGMDLHIKKQHKNIVPSSEVCRICNIKIQNKSKLRLHLINIHQVADDADDNIEMRMT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00347085;
90% Identity: iTF_00347085;
80% Identity: iTF_00347085;