Cmar013417.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000059.1:2244083-2245004[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.7e-09 9.3e-06 25.5 0.0 3 35 14 47 12 51 0.91 2 2 8.8 1.4e+04 -3.9 0.0 5 12 129 136 128 137 0.80
Sequence Information
- Coding Sequence
- atgaaaattaaaagacaaaaatatcaacaatacagtgctgaaaatttaaatgaagcaGTTCAtaaagtgaatgaaaacatATTGACCATTTATTCAGCTTCAAAAATATACGGAGTTCCGAGATCAACTTTAAAAACGAAATCAAAAACTATCACATTGTGCGGTGGATCGATAGTTGATATGAAAGTTGTTTTAACTGCAGGTCATTGTCTTAAGAATGCTAATGGTGGTGTCATCATCATTGGTACAAATGATTTGCTTTCTAATGAGACAGATGTTGTTCGTCATTATGTTGATTCCTCAAGTTTTAAAGTTCACCCACAATTTAACATTCACGTTGCTTATCTTGACGTTGCATTAATTATCTTACCTGAACctctgaaattttcaaatgctaTTCAATCTGTTAAGTTGCCATCTGGTTATCTCTTGGATGAATCATTTGCGGGTGAAATTGGAACAGTTTCCGGTTATGGTCAATATTGTGATACATGTGGATCATCAAATCTGTTAAGATTCACACAAAATCGTGTGATGCAAAATAAAGAATgtggaaaatcatttgaaattggaTTAATTCCTTCTGAAAATCATGTTTGTTTGTCAACAGTTGAAACTAATTCTGGGAATTGTCGTGGAGATTCAGaAACTAAGTAA
- Protein Sequence
- MKIKRQKYQQYSAENLNEAVHKVNENILTIYSASKIYGVPRSTLKTKSKTITLCGGSIVDMKVVLTAGHCLKNANGGVIIIGTNDLLSNETDVVRHYVDSSSFKVHPQFNIHVAYLDVALIILPEPLKFSNAIQSVKLPSGYLLDESFAGEIGTVSGYGQYCDTCGSSNLLRFTQNRVMQNKECGKSFEIGLIPSENHVCLSTVETNSGNCRGDSETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -