Cmar009412.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- TIGD2
- Assembly
- GCA_900005825.1
- Location
- CVRI01000048.1:795727-797859[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00011 0.17 11.8 0.0 14 39 38 63 30 66 0.88 2 3 0.035 57 3.8 0.0 19 40 183 204 171 207 0.81 3 3 0.00074 1.2 9.1 0.0 23 43 365 385 364 387 0.88
Sequence Information
- Coding Sequence
- ATGAGTGATGAGGAATTCGTTAAAGGCTTCGTTGGCAAACCATCAAGAAACAAACGAAAGCATGTAACATTAACTatagaagaaaaacttgagATCATTAATCTTGCTGAAGAAGGAAAACTCTCACGTCAAAAAATAGCAACAAAGTTTGGTATTGGAAAGAGTACCGTTCATGatatttacaaaacaaaagataaaattcGAATGTTTGCAGCAATGAACGATTCACCTGATATCAGTAAACGACGAAGGGTTGCTCCTAAATTTAACGCCTTTCTCCATGAAAATATGAAGGAAACAATAGAAGGCAAattcaaagaagaagaagaagaagaagaggtAATTTCTATGGAAGAATTTCCATATCAGGACTATGAAGTTGTGTATGATCCGGCACTTCCTAGTTTTAATGCAACAATCTTCGAAAAACCAAAAGATAAATCCAAGGAATTTTGTAACGAAAAATTAGATGCCAAGAAAAAGATTACAACACTAACAATTCGCGAGAAGCTGGAAGTCATTCAGCAAGTGGAAGCTGGCACGTTAATATCAAAAGTCTGCGAAATTTACAATATTGGAAGAACGACTGTCTACGATATTATTAAGAGAAAGCAACAAATTATCGAATATCTTGAAAAGTCTAATGACAGTCATAGACGAACtttcaaaaaatcaaaatatccCGAAGTTGAGGAGATGATGTTAAAATGGTGTGAGAATCAAGAAAGCTTTACAAAGCAATCATTCTACGATCAAGCTAAATTGGAGTTTGATAATGCTCGAGCCAAAGGTAACACTTTAAGCCCTAGTGGATTCTGTGGAAGTTGGTCATGGGCCAAACGATTCTTTTGCCGACATCCTCAATATAAATGGAAACTTCTGTCAGCATCAGGAGAACCAATTGATCCATTAGAACTTGAAATTCATAGTGAAGAGaatgtgaaggaaaatttacaaaaatcaGAGATAAAGGAAGAAGATGAATCATCACAGATTGataatcaaaaatcaaaaggaaataaattcttaacaTCTTCCGAAAAACTCGAAGTATTGAATCAGATCGATTCTGGCAAGCCTGTCCCAAACATAGCAGAAGAGTTTGGTGTATCTAGAACAACAATCTATGATATCTTCAAACGACGTGTTGAATTGCGAGAGAGAAAACTAACAAAGTCAAATGCTCAACAAAAGATTGTAAAATTACCGAAATATCCAAAATTAGAACAAGAGCTTCTCGACTGGTGTCTTCAGCAAAACTCATATCCATTAAGTAATGTTTTGATTGCTGATAAAGCTCTCTGTCTCTTTGATACTTTAGAACTCTCTGGGAATTTCAAACCTTCATCAACATGGGccaaaaagtttgttttaagACATCCCGAGTTACATAAAAAGCAAGGAATCGTcattgatgaagatgattcGGAATCGGAATATAAAATCAGTGAAATTGAAGAGAATGcaaatgaagattattttttaaaggaagaaattgaagacgAACATCACTTAGATTCATTTGAAGATGTTGAACATGAAATGCATGCTGATTTTCAAGAGGAAGACATTGGAGAAGAAGAATATATTTACGAGCAACTTGATGAACTCGAAGATAATCATGAAGATCATGAAGTCCAAAGAGAAATTCCcgttgaattatttgaaacttcaccacgaaaagatttaaatgatttaaagccAGAAGTACGTAAACaacaattatttcaaattcctGATGAAATTGctatgaaaagtttgaaaattctcataaaatattctgaGCAGCAAGGACACACGTACATGCTTTCATGCTTAACAGACTTTGAAAGACAACTCAAAGGTGATGTCAcataa
- Protein Sequence
- MSDEEFVKGFVGKPSRNKRKHVTLTIEEKLEIINLAEEGKLSRQKIATKFGIGKSTVHDIYKTKDKIRMFAAMNDSPDISKRRRVAPKFNAFLHENMKETIEGKFKEEEEEEEVISMEEFPYQDYEVVYDPALPSFNATIFEKPKDKSKEFCNEKLDAKKKITTLTIREKLEVIQQVEAGTLISKVCEIYNIGRTTVYDIIKRKQQIIEYLEKSNDSHRRTFKKSKYPEVEEMMLKWCENQESFTKQSFYDQAKLEFDNARAKGNTLSPSGFCGSWSWAKRFFCRHPQYKWKLLSASGEPIDPLELEIHSEENVKENLQKSEIKEEDESSQIDNQKSKGNKFLTSSEKLEVLNQIDSGKPVPNIAEEFGVSRTTIYDIFKRRVELRERKLTKSNAQQKIVKLPKYPKLEQELLDWCLQQNSYPLSNVLIADKALCLFDTLELSGNFKPSSTWAKKFVLRHPELHKKQGIVIDEDDSESEYKISEIEENANEDYFLKEEIEDEHHLDSFEDVEHEMHADFQEEDIGEEEYIYEQLDELEDNHEDHEVQREIPVELFETSPRKDLNDLKPEVRKQQLFQIPDEIAMKSLKILIKYSEQQGHTYMLSCLTDFERQLKGDVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -