Cmar018514.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- lolal
- Assembly
- GCA_900005825.1
- Location
- CVRI01000043.1:192106-200170[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0012 1.9 8.5 0.0 2 21 507 526 506 533 0.90 2 2 2.9e-08 4.8e-05 23.2 0.0 21 45 550 575 548 575 0.92
Sequence Information
- Coding Sequence
- ATGACTACAGTTCAGCAATATTGTTTGAGATGGAACAACCACCAGCCAAACTTCATTAGTGTTTTTTCCTCCCTTCTGCTGAATGAGACACTGGTTGATGTTACACTTGCCGCAGAAGGACGCCAGTTACAAGCACACAAAGTTGTGTTATCAGCATGTAGTTCATACTTCcagTCTTTATTCACAACGAATCCTTGTAAACATCCTATCGTGATTCTTAAGGATGTCCAGTACAACGACCTTAAAACAATGGTGGATTTTATGTATTATGGGGAAGTTAATGTATCTACAGAGCAATTACCGCAGATTCTCAAAACTGCTGAGATGCTTAAAATTAAAGGCCTCGCTGAAATGCCTGACGCAGCGTCAGTCACAAAATCTGATAGTAAATCGAGTGATCACACCGAAGGCAATCAATCAATTAGTGGCGTTGAATCGATGTGGGGTAGTACGGAAtctcagcaacaacaacagcagcagcagctacaacagcaacaacagcagcaataTCATCAGATACGTCGAACACCTTCACCTTCTTGCATGTCACCAGCAACGCGACGAAAACgtttaagaaaaacttctaCCGGTTCGGGTACAGCAAACATTTCAACATCGTCAGCTGAAAGAATTCACGATGATATGCAGGtgcaacatcatcaacaacagcagcagcaaatCATTGATGGTAGGATGATGCAGAAATATTCACAGCAGCAATCAGTTGATGTCCCATTGTCATCATTTTCAGTGACACCAAATGTTCGaggaatgaaaatcaattctAGTCCCGATGGTCAAATGCAGCATCATCAGCAAGATTCACATGAGCATCATATCGATGAGTCACAACATATAACGGAAATGaAAACGGAAGATTTAAGTTGTGTTAATCAGTCTATGCCATTGGATATTTCATCGGGAACATCATCGACGCCAGTCAGTTGTCCATCAACACATCAACAACACAGTGGTGGGCAGTGGGCGGTAATCGATACAAATTATCCTCGCTTTGCTTTGACTACGTCGGCAGCTGCCTTACCGACGAGTACTGTTCAGCACAGTAGCAGCATTCATCACtcccatcatcatcatcactcgCATCATCATCAAAGTGGACAGCAATCGGATGGACAGAGTGCTGGCAACGATAATCTTTCATTAAGCTCCAATCACAGTTCAAGCCATGGTAGCTCAAGTAATTCCAACAATAATGCGACAATACAATCGCAAAACTCAACACCAGTTCAGCTTCAATACCAAACGACTTATTCACCACAAATCATTGCTGTTAATCCAAACAATATCGTCAATAGTTATCCACCAAGCATATCGACACCAACAAGTCCGATCGTACAATCGGTGTACAGTCAACAAAGTACGCCAATTCAATCGCCTgttaatattcaaaattcCAGTAGCAATGCCGGTTCAAGTTCAACAAACAGTGCTACAAATGCTACTGTAACAACCACACCCGCACCACCTAAAAGAAAGCGTTCTGTGAATCCGCAAGGTGAAGAGAATTTCCTCAGAGCTCTTGACGCTGTGAGGTTTGGAGGAATTGGCTTCTGCAAGGAAAGTATCTTTTTCAAGATCATTAAGATGAAGAGgaaatgcttgaaaaactttttaaacttcATCGATGAGGCTGCAAGACTTTACGGTGTTAACAATCGTACACTTTGGTTGGAGTTTAAGAAGCGTGGCTATCCGATAAGTCGACCAAGTATTAAGAGTCGAATAAAAACAGAACCGAATATGAGCCCACCACCGCCTGCGCCATCAACGCCATCAGCTGAAGAGAATACGATGGAGAATTATGAATCGAACATTCAACAACCAATGGCTGGGCCTTCGTCAAGTGAAGGGTCGACGACACCGATAATGTGTCCGCCACATCATCCCCTGGGAGTCATGGGATTCCTAGACACGAGACATGTTGACTTTACAGCAGCCGGACTTCATCAAATGTCTCGACAGAGATATCCAGATGGAACAACTGTTAACATGAATCCTGGaaaagaagatgaaaattatgatgatgatgatgatgatgatgaagaaacatGGAAGAAGATGGcaaCAACATCAGAACTTGTTTTCACACAATGTTCACCGATATCGTCACCATCATCGCCAATGTCTTTGACATTAGCATCGCCTGCAATTATAACGCAAGCTGGCTCAGGAAATCCTCAAATAGGAAACAATGCAGGAATGGGAAGTAAACGTGGACGTTTATTGATCCGCCAACAACGTGTAAAGAAGGATGGTGATCAGGGTGGTGATTTGGAGACGCCTGAAGCTGGCGTTTACTCAGACTATTTACTCTCAGTGCCATTGTCGGGTGCAAAAATGGAACGTCACGCTTCAGAGCCATCACCAGCAACATCAAATCTGATAACGTCGACTTCATTATCGACTCAGAATCTTTTGTCCGTTCCACCAACACATTCTTCATATTTAGTGAAGCAACATTCACATCCTTTGCTACCGAGTCAATCGTCATCATCTCCAGGCACATCTTACACCCTCACCCGTCAACTTTCTTATCCAACACAATCATCTTCAAATTCACAAACAATTGTGAGTACTGTGACAACACATGCGGCACAGGAAATTGTCGCAAGTGGACAATtacttcaacttcaacatcaTAAACCACCTGCATCAACAAGAAGTGATCTTTCATTTGAGACAGCAACACGATCCAGTCATTGTCCAACACTCCGACCAGGACCTGCATTAGGTTGTAATTTTTGTTGGAACACAATTGACGCCCATGGAAGAATTCTCCGACGTAAAACTAAATATCACTGTCCTGAATGTCAAACGAATTTGTGTATTGTGCCATGTTTCCAAGAATATCATGAACGACAATCGACGGAAGGCAATGAAACGACGACGCCTGCTAACAAAGCAAGTGGATTAAAAGGCCTTAAGTCGGGCTCCatgtaa
- Protein Sequence
- MTTVQQYCLRWNNHQPNFISVFSSLLLNETLVDVTLAAEGRQLQAHKVVLSACSSYFQSLFTTNPCKHPIVILKDVQYNDLKTMVDFMYYGEVNVSTEQLPQILKTAEMLKIKGLAEMPDAASVTKSDSKSSDHTEGNQSISGVESMWGSTESQQQQQQQQLQQQQQQQYHQIRRTPSPSCMSPATRRKRLRKTSTGSGTANISTSSAERIHDDMQVQHHQQQQQQIIDGRMMQKYSQQQSVDVPLSSFSVTPNVRGMKINSSPDGQMQHHQQDSHEHHIDESQHITEMKTEDLSCVNQSMPLDISSGTSSTPVSCPSTHQQHSGGQWAVIDTNYPRFALTTSAAALPTSTVQHSSSIHHSHHHHHSHHHQSGQQSDGQSAGNDNLSLSSNHSSSHGSSSNSNNNATIQSQNSTPVQLQYQTTYSPQIIAVNPNNIVNSYPPSISTPTSPIVQSVYSQQSTPIQSPVNIQNSSSNAGSSSTNSATNATVTTTPAPPKRKRSVNPQGEENFLRALDAVRFGGIGFCKESIFFKIIKMKRKCLKNFLNFIDEAARLYGVNNRTLWLEFKKRGYPISRPSIKSRIKTEPNMSPPPPAPSTPSAEENTMENYESNIQQPMAGPSSSEGSTTPIMCPPHHPLGVMGFLDTRHVDFTAAGLHQMSRQRYPDGTTVNMNPGKEDENYDDDDDDDEETWKKMATTSELVFTQCSPISSPSSPMSLTLASPAIITQAGSGNPQIGNNAGMGSKRGRLLIRQQRVKKDGDQGGDLETPEAGVYSDYLLSVPLSGAKMERHASEPSPATSNLITSTSLSTQNLLSVPPTHSSYLVKQHSHPLLPSQSSSSPGTSYTLTRQLSYPTQSSSNSQTIVSTVTTHAAQEIVASGQLLQLQHHKPPASTRSDLSFETATRSSHCPTLRPGPALGCNFCWNTIDAHGRILRRKTKYHCPECQTNLCIVPCFQEYHERQSTEGNETTTPANKASGLKGLKSGSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00346813;
- 90% Identity
- iTF_00346813;
- 80% Identity
- iTF_00346813;