Cmar015561.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000063.1:690351-692073[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-05 0.02 14.9 0.0 6 41 256 292 251 296 0.90 2 3 0.0003 0.5 10.4 0.0 8 35 306 332 304 340 0.86 3 3 3.2e-10 5.2e-07 29.5 0.0 2 43 359 400 358 402 0.88
Sequence Information
- Coding Sequence
- ATGTCGTTCGTAATAAATACAACGATAGATAAAAATCAAGAGCTTTTAAATGCTTACAGAGAGTTATATGAAAGCAATGACCCGAAAGATGTTTTCTTGATAAGTAAAAACACTTTTGTTCCTGTTAATTCTTTTGCTTTAGCATTGAGTTCAGATTTCTTGAAAACCTTGTTAAGTGAAAATCAACGAGATACAGTTAACATCATAATAGATGATGTCGATCCAGAGATATTAAAGAAACTTGTGGAGTACATTTATTTTGGTTGGATCAGTTTGGATTCAAAATACATGTCTGACTTCATTGAAGCTTGCAACCTGCTGCAGTTAAAGGCAACAATATCATGTGAGCGTAAACTTGTATTTAACAAAGTACAGAAAACCTCATGTCCTGCAAAATTCACATCTACTCCTATTCGATCAAATACTGCTAAAGAGAACAATCTTGACTCCCTTATTGAAGACCTTGAGacacaagaagaaaatgttgaatataCTTTGAAACAAGAAGCCGACCAGGAGTCTGGACAAATACTGGAAGTCTATGAAATATCAAACATTGATGATACAGAGAACAATTATGAAATGgctgatgaaaatgaagatattAGCGAAGAACAATATGAACTTCTTAATGTTGTCTCTGAAGCTAAAGATGAGCCTTTAGTAATGCAGAGtgttttaaaaacaaagaaagagaagTTAGATCGGGAACCGCATGACATTAAGCAACGTTCACCCCCAAAGAATCCAGAcgaaaaaattgtaaatgaagctatcaaagagattttaaataattcaagcaGTTTCCGAACAGTATCTGAGAAATATCAAATTCCTAAAACCTTGTTATGGCGTCGAGCAAAGAAACTTGGCTAcgttaaaagtgaaaaacagAAAGATCCTTTACGTCTGCAAGCCATTGATGCTATTAAACGAGGAGAAAGCTTGATAAGTTTgtcaaagaaattcaatataCCGATTTCTACACTCCATCGGGAAAAATTGAAGCTTTATGAGATGGGCCAACTTCCTGAAAGTGTCAATTTCAAGAACCGTTCTCGAGGGGAGGATTATGAAGATCGTTTGCGTGTAGCAATTGCGGAAATATTAAATGGAAAGAGTCAAAATGAAGTTGCAAAGAAATATAATATTCCCAAAACCACAATTTGGAGAATCATCAAGAAAGTAAATCCTGAGTACAAATCAGCAGGTCAAACTCTAACTCCTGATTCAGAAATCGTCGAAAATTTGATAGCATTGAGCAAGAAACGTTCtgttaaagataaaaattataaagataaatttgacgacgatgaagatgatgatgatgagaaatttaacGAACTTAGTTaa
- Protein Sequence
- MSFVINTTIDKNQELLNAYRELYESNDPKDVFLISKNTFVPVNSFALALSSDFLKTLLSENQRDTVNIIIDDVDPEILKKLVEYIYFGWISLDSKYMSDFIEACNLLQLKATISCERKLVFNKVQKTSCPAKFTSTPIRSNTAKENNLDSLIEDLETQEENVEYTLKQEADQESGQILEVYEISNIDDTENNYEMADENEDISEEQYELLNVVSEAKDEPLVMQSVLKTKKEKLDREPHDIKQRSPPKNPDEKIVNEAIKEILNNSSSFRTVSEKYQIPKTLLWRRAKKLGYVKSEKQKDPLRLQAIDAIKRGESLISLSKKFNIPISTLHREKLKLYEMGQLPESVNFKNRSRGEDYEDRLRVAIAEILNGKSQNEVAKKYNIPKTTIWRIIKKVNPEYKSAGQTLTPDSEIVENLIALSKKRSVKDKNYKDKFDDDEDDDDEKFNELS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00346879;
- 90% Identity
- iTF_00346879;
- 80% Identity
- iTF_00346879;