Cmar003139.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- -
- Assembly
- GCA_900005825.1
- Location
- CVRI01000006.1:1098814-1103320[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-12 2.2e-09 37.1 0.0 1 39 331 370 331 374 0.91 2 4 5.1e-12 8.3e-09 35.3 0.0 2 39 386 423 385 426 0.94 3 4 4e-16 6.5e-13 48.4 0.0 3 45 442 485 440 485 0.97 4 4 5.3e-19 8.7e-16 57.6 0.0 1 41 492 533 492 535 0.97
Sequence Information
- Coding Sequence
- AGCTTGATTAGAACTGCGGAGCAGTTGAAAATCAAAGGATTGTGCGAAATAAACGATCATACAAACGCAACGGAATCAGACGCGGAGGTTGTTTATCCACCACATAAGAAGATTCGTGCATCTCGTAACTACGATAATAACAACAGCTCAACAAACTGTAATAAGAATTTATCAAAGCGAGAAGAATATCATCATTCGACTTCCAAGTCATCATCAAGTGTTATTGATAAAGATGCACATCAATCAATAACGTCATCGCACGAAGATAATAAGCACAAATCTAAATCGCCgcaaaaggaacaaaaaaacGCTTCGAGTTTGTCAAGCACTCAACATAGTAAAAACATGGCGAGTCTCGAAATGGGAATGaATTTTCAGAACGGTAATGTTGTCATGGGAGTGCCACTAACCTACATGGATTTTGCACCTGAGCCACCAGCACCGACTGCTACACCCGTCATCACAACGGAAATGAATTGTAATCCAAGTCAAGATACTAAAGATTTGTCTCACTCAACACCGATTAACGGTACCGAAAATGCCAGAATCATTAAATTCGAGACTTTGCGATCGCTCGATCCGACCGAAACGATTGTTGAGTTTGATAATTCCATTCAACATTCCATTTGTCGTCTAGATCAAGTGGCTTCCTCGCATCATCCAACAGTGTCGTCGAGCAGTCCGATTCTTCATCATTCACATCACTCTCCAGCGCAAGTTCAAATCATTACAACATTGGGCAATATGGATGTTGATGGACAGCAATCGTCGAATAACGGCGGTGATAATGTTCATGGCATTGTTGTGACACCGGAAATCGGAAATATGATGACAACACCCACGCAAATCGAAATGTATCATTCAGACACCAGTGATGATGCTAAAATGCAAACAGATCAGAATGGTTCAGGACAATTACAGTACATCACATTGGGAAACAATTCAACACCATCAGGTGATGGAAAGAATAACAGTGGACCGAAAACATGGACACCGAATGATATGGAAGCAGCACTTGAAGCTTTACGTTCACATAATATGAGCTTAACAAAAGCATCAGCAACTTATGGAATTCCGTCGACAACTTTATGGCAACGTGCACATCGTTTGGGAATTGACACACCGAAAAAAGAAGGCCCGACAAAAACATGGAATGAAGATTCGTTGAATAATGCTTTGGATGCGTTAAGAACGGGGACAATTTCCGCGAATAAAGCATCGAAAGCTTTTGGTATTCCATCATCAACACTTTATAAGATTGCAAGGAGAGAAGGCATACGTTTAGCAGCTCCATTTAATGCTGCACCAACGACGTGGTCAGCAGAAGATTTAGAAAAAGCTTTGGAAGCTATCAGAGCTGGCGCTGCTTCTGTTCAAAAAGCAAGCACAGAATTCGGAATTCCAACAGGAACACTTTATGGTCGTTGCAAACGCGAAGGAATCGAACTGTCACGATCAAACCCAACACCGTGGTCTGAAGATGCGATGATGGAAGCTTTGGATGCCGTACGGGTTGGACAAATGTCGATAAATCAGGCAGCGATTCACTACAATCTACCCTACAGTTCACTTTATGGTCGTTTTAAACGGGGAAAATATGGCGATCCACCGAATGGTAATCCAATCAATGATTCTTCACATAACACGACTGAACATAGCCCTGATAACTCAATGAGCTACGGCCATCATACGCTTATTGCTGACTCTAATGCTACCGCGCAACTTCAAGAGAATCAGATCATATACCAACAACATTACTCACCGTCAACTCAAATCATTCATCAACAACCGCCCCAacaaatttatcatcatcagcaaATTATTTATCAGAATCATCCACAACCGCCGCAAATTCTGCAAATTCATCAGATTAAGAAGGAGACTAGTTGA
- Protein Sequence
- SLIRTAEQLKIKGLCEINDHTNATESDAEVVYPPHKKIRASRNYDNNNSSTNCNKNLSKREEYHHSTSKSSSSVIDKDAHQSITSSHEDNKHKSKSPQKEQKNASSLSSTQHSKNMASLEMGMNFQNGNVVMGVPLTYMDFAPEPPAPTATPVITTEMNCNPSQDTKDLSHSTPINGTENARIIKFETLRSLDPTETIVEFDNSIQHSICRLDQVASSHHPTVSSSSPILHHSHHSPAQVQIITTLGNMDVDGQQSSNNGGDNVHGIVVTPEIGNMMTTPTQIEMYHSDTSDDAKMQTDQNGSGQLQYITLGNNSTPSGDGKNNSGPKTWTPNDMEAALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKTWNEDSLNNALDALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLEKALEAIRAGAASVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALDAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYGDPPNGNPINDSSHNTTEHSPDNSMSYGHHTLIADSNATAQLQENQIIYQQHYSPSTQIIHQQPPQQIYHHQQIIYQNHPQPPQILQIHQIKKETS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -