Ccur018492.1
Basic Information
- Insect
- Clostera curtula
- Gene Symbol
- -
- Assembly
- GCA_905475355.1
- Location
- FR997815.1:7659416-7660636[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.9e-05 0.002 19.5 0.6 2 21 103 122 102 123 0.93 2 10 1 1e+02 4.6 0.1 3 23 129 148 128 148 0.92 3 10 0.0075 0.76 11.3 0.3 1 23 153 176 153 176 0.96 4 10 0.00064 0.066 14.7 0.7 1 23 182 204 182 204 0.93 5 10 3 3.1e+02 3.1 6.1 1 21 207 227 207 228 0.95 6 10 1.6e-05 0.0017 19.7 0.6 1 23 240 263 240 263 0.93 7 10 4.8e-05 0.0049 18.2 1.7 1 23 269 291 269 291 0.98 8 10 1.2 1.2e+02 4.4 0.3 5 23 301 319 298 319 0.95 9 10 0.83 84 4.9 1.0 1 23 325 348 325 348 0.91 10 10 0.00045 0.045 15.2 1.2 1 23 356 379 356 379 0.93
Sequence Information
- Coding Sequence
- ATGGACTACACACTACCCATGGCCACCTGCAGACCCTGCTTCGACCAGACGCTCGCTGTTGTCAACTTCAAAACCCTGTGCGCACAGTCGGCACAGCGCTGGCGAGACGCTACAAACGTCCTCCTTCAAATCCATGACGCGACTGACTCTGAAAAGGCTTACATCATCTTTTATAGCAACGAGAAGACCGTGATTGAAAGCCAAACAGAAAGAGTAGAGACAGTAGCAGATGCGCTGGTCAAACTGAACAGTAAACCGAAAAAGATTAGCAAGGAGAAGCCGAAACGCTTATTAAAGCTCCCTTGCACGTGTCCAGATTGCGGTAAAATGTTTCGAGCCCCGGATAAACTTAATTCCCACCTCAAAAACACTTTAAAGCGATCTTGTGAACAGTGCGGTGCAGTTTTACCCAAGAATAAATTAGCCAAACACTACGTGACCCACAATATAGTAGTATTCTCTTGTGATATTTGCTCCGATGTCTTCGAAGATCACGAAACGCTAGAAGAACATTTGGCCAAATCGCATACGTCCAATGCCCAATATCTGTGTAATATTTGCGGGAACGAGTTCACAAACGATCGGTCGTTGCGCGCGCACCAATATTTCCACTCTCTATACCATTGCAAGTCTTGCAACTCTAGCTTTGAGAACGTCAAGTGCTTTATACATCACCAGAAGTTATGCAAGCCCGTGAAACAGCCACAGTTTAAATCATATAAGTGCCACGATTGCGGCGTTGTGTATGATAGGAAGCCGTCTTTGCGAGTGCACATAGTTCAGAAGCATCTCAACGTATTGCCCTACGTTTGCCAAACGTGCGGGAAAAGGACGTCTACTTTACCGCACCTAAAGTCCCACGAAAAGATCCATAAGACTGAAAGAAAGGTCTATCAATGTTACTGTGGCGCGAAGCTCCGGACTGAGCTTGGTTATCAGCTTCACCAGCGGATTCACACGGGGGAGAGACCTTACGAGTGCGAATTCTGTGGGTTTAGGTACCTGTCGGCTTCCAGGAGGTTGGATCATATTAAAAGAAGGCATAGGGGTTCAGAGCAGATGCCATATGCTTGCAGCAAGTGTTCGGCGCGGTTTGTTAGGCCGTGTGAACTGAAGAAGCATTATTTGGCAGTTCACTACTCTGTGGTCGATGTGATGCCGGTGAAACGAGAGGTTGATCCGGTGACGCGTAGATTGAGGAATACTTATAAAGTTAAATAA
- Protein Sequence
- MDYTLPMATCRPCFDQTLAVVNFKTLCAQSAQRWRDATNVLLQIHDATDSEKAYIIFYSNEKTVIESQTERVETVADALVKLNSKPKKISKEKPKRLLKLPCTCPDCGKMFRAPDKLNSHLKNTLKRSCEQCGAVLPKNKLAKHYVTHNIVVFSCDICSDVFEDHETLEEHLAKSHTSNAQYLCNICGNEFTNDRSLRAHQYFHSLYHCKSCNSSFENVKCFIHHQKLCKPVKQPQFKSYKCHDCGVVYDRKPSLRVHIVQKHLNVLPYVCQTCGKRTSTLPHLKSHEKIHKTERKVYQCYCGAKLRTELGYQLHQRIHTGERPYECEFCGFRYLSASRRLDHIKRRHRGSEQMPYACSKCSARFVRPCELKKHYLAVHYSVVDVMPVKREVDPVTRRLRNTYKVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -