Ccur011631.1
Basic Information
- Insect
- Clostera curtula
- Gene Symbol
- -
- Assembly
- GCA_905475355.1
- Location
- FR997820.1:8466270-8478579[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.91 92 4.8 0.0 2 23 152 173 152 173 0.95 2 12 1.3 1.3e+02 4.3 2.6 1 23 180 202 180 202 0.96 3 12 0.014 1.4 10.5 0.3 1 23 206 229 206 229 0.94 4 12 4.6e-05 0.0047 18.3 5.2 1 23 234 257 234 257 0.92 5 12 0.00016 0.016 16.6 0.3 2 23 264 285 263 285 0.97 6 12 0.00035 0.036 15.5 2.2 3 23 300 320 298 320 0.97 7 12 0.018 1.9 10.1 0.3 2 23 326 348 325 348 0.94 8 12 0.027 2.8 9.6 3.2 2 23 377 399 376 399 0.97 9 12 0.059 6 8.5 0.4 1 23 406 429 406 429 0.95 10 12 0.0009 0.092 14.2 0.4 6 23 439 457 437 457 0.96 11 12 0.0016 0.16 13.4 4.7 1 23 466 488 466 488 0.97 12 12 0.00041 0.041 15.3 0.5 1 23 493 516 493 516 0.98
Sequence Information
- Coding Sequence
- ATGCCTAAAGTTTCTCCATTAGAAATATTTGTAAAACTTGAGCCTCAAGATCCAGATATCCATCAAGATGCCCAAAATGAAGTAGCTAACACTTCTGACCAACCAGAGGTCTGGATCAAGACAGAGCCAGCTGAAGTAATTACACAACTGGCAGTGAAAAGTGAAAACAAAGTGCTAGTCGCTAATGGTTCAGACATTGTTGACAAAAAGAAAGATTTGAAATTGCCGCTAAAGAAGAGATTTGAAGTGCAGATAAAAAATGAAACTGCAGAGGTGTCGCAAAATAAAACCGTGGAGGGAGATGTCAAGCCACCACCTAGCAAGCCTAAACCGGAGATACCACCGATGTACTCGTATGATATTACGAAGCATATCGAGATATTCACCATCGACGAGAACCAGAGGCAGATCGAGCACAGAGAGATCCTGAGCACTAAGCAACACATGCGGCGAGTCTGCGAGCACTGCGCGATCGGATTCGTGCTCGACGAGGCGTACGCGTCGCATATGAAGGCGCACTCGCCGGAGTCTGGCCCCCACGAGTGTGACATCTGCCACAGCTTCGTCAAGTCTGCGGACATTTTGTACCGTCATCGGCTCCGCCATTTCCGTCGGTATCGTTGCATGCTTTGCGCTAAGGAGTTCAAGGATAAGGACAAAGCCAACAGCCACGTGATGGCCGACCATGCTGGCCAAGCCTTCCAGTGCAAGAACTGTCATAGGACTTTCAAACGGCCCCAGTACTTGAAACGCCACGAGGAACAGTACCACAAGAGAACACTTCAGCTGCAATGCAACGTGTGCTCCAAGATCTTCTACGAAAGGGGATGGTATAGGGCTCATGTGAGAACCCACAACCGAGACGTGAAGACGAAGACGGTGCGAGTGGTCATGATATGCGACTTCTGTTCCCGGAAGTTTCACACGAAGGCCAGCCTCATCCGCCACCTGGAGACCCACGACACCGAGAGCATGGTCTGCACCATCTGCCGGCAGCAGTACACCAATAGGAACGACCTGGGCCAGCATTATTTGAACGTTCACAACGAGATATACAAGGGGTACGAAACTGGTTTTATTTATGTGATTTTAACCTTTTACCCTACTTCAAAATGGGCTCCTGACTCCACGTGTCCCGTTTGTCTCCGCGTGTGCCTCACGCGGGCGCTTCTGAGACATCACATGCGTCGTATGCACACTGACCGGACCAAAAAGTACCAGTGCGACTACTGCCAACGCCTGTACCTGACAAAGGGAGAGGTCCGATCCCACATAATGTGGTCTCACTTGCACGCCCGCGGCCACGAGTGCCCATGCGGCCGCGTGTTCCGCTCGCCCTCGCTGCTGAAGAGCCACCGGGCGAGGCTGCACTCCCAGTACCCTGTGCCTCGGAACCATAGCTGTGAGGACTGCGGGAAGGCTTTCCATAACAAACAGATCCTGAACCGTCACAAGAAGAGTCACAGCAACGAGCTATACCCTTGCAACGAGTGCGGCATGCTATTCAAAAGTCAACCTTACGTGAAGATCCACTACCAGACCAAACACATGAACATGACCCGCGCCCAGATAAAGGCGAACGCGCAACTGAAACGCGCCCAGGGGCCAGGTAAGGATGGCCAGCCCTCACAGGAAAGCTACTCCAACGGGGAGAATGTAGCTGATCCGTTGGAATTTGATGGAGGGGAGAGTCACTCGAAGATTGAGATAGAGATGCCTATTTCGGTGCCCCTGTTTCAGACTTTTGCTAATGTTAATGAACAGTAG
- Protein Sequence
- MPKVSPLEIFVKLEPQDPDIHQDAQNEVANTSDQPEVWIKTEPAEVITQLAVKSENKVLVANGSDIVDKKKDLKLPLKKRFEVQIKNETAEVSQNKTVEGDVKPPPSKPKPEIPPMYSYDITKHIEIFTIDENQRQIEHREILSTKQHMRRVCEHCAIGFVLDEAYASHMKAHSPESGPHECDICHSFVKSADILYRHRLRHFRRYRCMLCAKEFKDKDKANSHVMADHAGQAFQCKNCHRTFKRPQYLKRHEEQYHKRTLQLQCNVCSKIFYERGWYRAHVRTHNRDVKTKTVRVVMICDFCSRKFHTKASLIRHLETHDTESMVCTICRQQYTNRNDLGQHYLNVHNEIYKGYETGFIYVILTFYPTSKWAPDSTCPVCLRVCLTRALLRHHMRRMHTDRTKKYQCDYCQRLYLTKGEVRSHIMWSHLHARGHECPCGRVFRSPSLLKSHRARLHSQYPVPRNHSCEDCGKAFHNKQILNRHKKSHSNELYPCNECGMLFKSQPYVKIHYQTKHMNMTRAQIKANAQLKRAQGPGKDGQPSQESYSNGENVADPLEFDGGESHSKIEIEMPISVPLFQTFANVNEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -