Ccur009173.1
Basic Information
- Insect
- Clostera curtula
- Gene Symbol
- -
- Assembly
- GCA_905475355.1
- Location
- FR997808.1:2019589-2024666[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00058 0.059 14.8 0.4 1 23 295 318 295 318 0.92 2 12 0.0077 0.79 11.3 2.1 1 19 332 350 332 354 0.92 3 12 3.6e-05 0.0037 18.6 3.6 2 23 360 381 359 381 0.97 4 12 0.00078 0.079 14.4 1.8 1 23 385 408 385 408 0.96 5 12 0.17 17 7.1 1.9 1 23 411 433 411 433 0.97 6 12 0.00084 0.085 14.3 0.4 2 23 501 522 500 522 0.96 7 12 0.13 13 7.5 0.3 2 23 542 564 541 564 0.96 8 12 1e-06 0.0001 23.5 4.1 1 23 570 592 570 592 0.98 9 12 0.00043 0.043 15.2 1.9 1 23 597 619 597 619 0.98 10 12 0.0017 0.17 13.3 4.6 2 21 626 645 625 648 0.94 11 12 2.7 2.7e+02 3.3 2.1 1 19 656 674 656 679 0.87 12 12 0.067 6.8 8.3 1.9 3 19 688 704 687 709 0.93
Sequence Information
- Coding Sequence
- ATGGAGGGTGAGGACTATAGTATGGGTTCTGAGGGCCCATATCCTATACTTTTTATACCAAAAGTGTGCACATCATTGGAAACCAACTGCCAGATGTCAGAAAATGTGTTCATATACCTAAATATCACGTCTCCTGATACTGAAGGTAACCAGACTGGTATTTATTCAGGATATTGTAATATAAAGATTGTTGAAAACACTGATATTAACATACAATATGACTCCCAGAGTAGCTCGTCAACAGAAAATGCTCCGGTAACATTAGCAGAAGCAAACCAATTAACATTTCCTGCATACAATGAGTCCGTCTGGATAGACCCAGCAAGAAGTCCATATGTGTACAATCATTGTAACTCTCCCCTGCGAGAAACATATACCATTCACGAAACCCATGCAAACCATATTACGGTAGAGCAACACAATACCTATATAACACAAAATGTTTACAAGTACAATGAAGCAGTGCATTATTCCCCCGTTGTTGATGAACATAAGAACATCCGGAAAGTACAGAAGGAAAATACCCAGAATGCAGACAGCTATAATTTATATGAGGAAGATGAGCTGGAATGTGGAGTTTTTCTTTCTCAAATGTCAGAGGAGATTATAAATGAGAAAGAGACCAAAGCAAGAGATGAGAGAAAATTTATTGGATTGAAGACGGATAATGAAGCCTTGAAACAGCTGATGTCTTCTGATATTCAATCTGCATCAAAGCAGCAGAAGACTATACTGTTCTTGGGCCATGATTCAGAGTCCGGTCAAACAATTCAGAACATTTCTATTAATGATCCAATGCTGGAGTGTATGAATAATGGGGATGTCGACTCTGAACTTGTTGTTGAAGACCTAAAAGATTCCTACACTCCCCAAAAGAAGAAGTACCAATGTGACAAGTGTAAACAAATCTTCGACCAATTAGCCGCGTTCAAACAACACATGGTGGGGAGCCACCGGCACTCAAACCTTTACGATATACCGGGCACCGTCAAATTCATGTGTACCGAGTGCGGAAAAAGTTTGAAGAATCAGGAAAAGTTTGAGCTCCACTGCCTGGGACACGGCGACCCAGAGCTAGAATGTAGCAAGTGCCATAAAGTTTTCGCCTCGAAATTCACTTTACGTAACCATAGAAAAATACATTCTAGAAAGTTCCCTTGCAGTTACTGTACTAGGTCCTATTCTACCGTGGAAGAACTACACGCCCACACATCGAAATCTCATGACATTTTTATGTGTGAAAGTTGTACGTTTATTTGCAACAAGTTCTCGGACTTAGCTGCGCATAGGGATACTCATAGAAAGTTCTCGATCGATTCGAAGAACTCCAGCGAGTCTGAGTACGCTGAAGGTTTGTTTGAAGAGATGTGTGATGAACTGTCGAATGGTTCGCAAAAATCTGAAGAAGAGAGGACGAGGTCGGCGGACTCCGTCATAGCCAAAGTGATGTCGAACAACATTTTTAGTTCGAACGCTAAGAGGAACAAGCGGTATAACAAGACTTGTGAAGTTTGCCTCAAAAAGTTCGATCGCGTTGGCGACCTAAAAAGGCACCTCATAGAACACGTGATTCGCAGCACCCTAGCCAAGAACCCTGTGAACAAATACGGGGTCCTCAATATCCGATGCGAGATCTGCCAAGAGAAGGTCTTCAACAAGATAGACAGGTACAAAGCACACTTACGTGAACACGCCAAACTGACACTTTACAAATGCACATTCTGTGATAAGTCTTTTAGCGACTCCAGCAATTTCTCTAAACACAAGAAGATCCATGGGAGCACTTACTTCCAATGCGACATGTGCCAGAGGAAATTCAACTCTAAGAAGATGATCATACAGCACATGGAGTATCACAACAAGAATGGCCCGGTACCATGTCATTTTTGCGGGAAGGTCTTCCATTTTGAATCTATGCTCAACAAGCATATAAGATGTTCACATACTCGGGAGGCAGCGAGTAAATTTCGGTGCAGATTCTGTCATGAGTATTTTAAGAGTTTGAAGGAGAAATGGGATCATGAGTGGACCGTCCACCATGTTAGGAAGGTCATTGTGGACTGCCTGCTCTGTGGTTCAAGATTCCGGAAGTATTCCGAGTTGAAAAGGCATTGCATTGAAGAACACGACACGGCAATACCTCCGGCTAAAAGGTTGCTGAGATGGAAATTGAAAAGGAAATATAGGATTGAGGATGATTAG
- Protein Sequence
- MEGEDYSMGSEGPYPILFIPKVCTSLETNCQMSENVFIYLNITSPDTEGNQTGIYSGYCNIKIVENTDINIQYDSQSSSSTENAPVTLAEANQLTFPAYNESVWIDPARSPYVYNHCNSPLRETYTIHETHANHITVEQHNTYITQNVYKYNEAVHYSPVVDEHKNIRKVQKENTQNADSYNLYEEDELECGVFLSQMSEEIINEKETKARDERKFIGLKTDNEALKQLMSSDIQSASKQQKTILFLGHDSESGQTIQNISINDPMLECMNNGDVDSELVVEDLKDSYTPQKKKYQCDKCKQIFDQLAAFKQHMVGSHRHSNLYDIPGTVKFMCTECGKSLKNQEKFELHCLGHGDPELECSKCHKVFASKFTLRNHRKIHSRKFPCSYCTRSYSTVEELHAHTSKSHDIFMCESCTFICNKFSDLAAHRDTHRKFSIDSKNSSESEYAEGLFEEMCDELSNGSQKSEEERTRSADSVIAKVMSNNIFSSNAKRNKRYNKTCEVCLKKFDRVGDLKRHLIEHVIRSTLAKNPVNKYGVLNIRCEICQEKVFNKIDRYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKIHGSTYFQCDMCQRKFNSKKMIIQHMEYHNKNGPVPCHFCGKVFHFESMLNKHIRCSHTREAASKFRCRFCHEYFKSLKEKWDHEWTVHHVRKVIVDCLLCGSRFRKYSELKRHCIEEHDTAIPPAKRLLRWKLKRKYRIEDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -