Ccur018264.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Clostera curtula
Gene Symbol
-
Assembly
GCA_905475355.1
Location
FR997815.1:4810478-4814774[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.054 5.5 8.6 0.1 1 23 130 153 130 153 0.94
2 16 6.4 6.5e+02 2.1 7.9 2 23 224 245 223 245 0.95
3 16 0.02 2 10.0 2.8 1 23 249 271 249 271 0.97
4 16 0.15 15 7.2 3.0 1 23 276 299 276 299 0.96
5 16 0.031 3.1 9.4 1.0 2 23 307 329 306 329 0.95
6 16 1.8e-05 0.0018 19.6 1.0 2 23 337 359 337 359 0.97
7 16 2e-05 0.0021 19.4 2.4 2 23 366 387 365 387 0.98
8 16 0.0041 0.42 12.1 0.1 1 23 477 500 477 500 0.94
9 16 2.8 2.8e+02 3.2 2.7 2 23 575 596 574 596 0.95
10 16 0.00017 0.017 16.5 0.5 1 23 600 622 600 622 0.97
11 16 0.089 9.1 7.9 2.4 1 23 627 650 627 650 0.90
12 16 0.23 24 6.6 0.7 2 23 657 679 657 679 0.93
13 16 0.00032 0.033 15.6 1.5 2 23 687 709 686 709 0.96
14 16 0.00054 0.055 14.9 2.7 1 23 715 737 715 737 0.97
15 16 5.8e-05 0.0059 18.0 2.9 1 23 743 765 743 765 0.99
16 16 0.00025 0.025 16.0 5.6 1 23 771 794 771 794 0.98

Sequence Information

Coding Sequence
ATGAAGATCACGCCTGTGCTTCATATTCAGTATCTTATGTTCGTTAAGAACAGGCGTAACGTGACTACGAGGTGCAACGTCAAAACAGAATCGAGTACATGTATTCTGGACTCTGACTCATTCAAAGAGTCCTTCTCACTGTTTTGGAGAGGAGGCGAGGACCGTATACAACCAAAAGTGGTCGACCATAACCAAAACGCGAATTCTGATTCGGCGGTTATCCTCATAGTCAAGTCAGAAGATAGTGAGACGCAGAACTTAGATACTGAAAAAGAAACTCAACATAAGGTAGATTCAAGGATTGAGCTCAGTAAACATAGAAATAATTTAGCTGAGATACTAAAACATAGCAATGCAACACTTATTCTCAAAATGGGGAAAATCGGCTACCGGTGTGCATATTGCGCTGACGAATACCCCAGACCTGCAGATTTGAAGAAGCATACGCTAGAAACTCACGGCAATAAATCTGATACGGTATTCAAAGCAACTACATTGAGCGAATACATTGTAAAACTTGACATAACTGACTTACGCTGTACCCTGTGCCATTCTTCCATGGATTCGCTTCAAGTATTTCAGGACCACCTGATTTCTAAACACAATAGGACCATTTTTACAAATGTAAAAAGCCACATAGTACCCTTTAAATTTGACACAGAAGTTCTATCCTGCTGTCTCTGTCTGTGTCAGTTCGACCGGTTCAAAAATTTACAAGAGCACATGCATCAACATTTTAGAAACTATATCTGTAATATCTGTGGGTCGGGATACGTTTACATGAGTTGTTTAACACGTCACAAACACATTCACAAAAAAGGCAAGTTTCCATGCAGCTACTGCCCCAAGATTTGTGACACTAACATGAAGAAGAAAATGCACGAAAGGAGTACTCATACTCATACCAACAGTAGGATTGTCTGCGGTTATTGCAACGAAGGATTTCGAGACCACAAGTATAAAATGCTTCATCTTAATAAGGTGCACGGCGTCAATGTTCCTACGCCACAATGCAACGCTTGCAATAGATCTTTTGATACTGCCAAAAATTTGCGCATTCACATCAGGAAATATCATTTACTAGAAAAGTGCAAAAGATGTACTGAGTGTGACATGAAGTTCTTCAGATCGACCGAATTGAAGAATCATATGCTAACACACACAGGGGAGAAGAAATTTCAGTGTAAACTCCTAGTATCTAAAGTGAAAGAGGAAATCAAAGACGACCCAGAAACCACAGATTCTGAAGCAGATGAAACTCTTTTAAGCATAAAAAGGGCCTTAAAACGTACCGAACGTAAAACTAACAGATCGGTGCCCGAAGGCAGACAGTCTTCCAGAGAAGAGTTAAAGAAACATCATCACAATTTGCGAGAGATTCTTAAATGCACTAATGCCACGCCAATCTTCCGACGAGGTGGCGTGGGCTATATGTGTAGCTACTGCATGAAAGAGTTCCCAGATGCTGCCGATTTAAAATTGCATACACTTGAAAATCATTCGCCTGATGGTAATACCATGATCGGATCCTTGAGGCATTTTACTCTAATGTCAGACTACAGCATGAGACTTGACGTTACCGGACTTCGCTGTATACTCTGTTACAGCGACATCATCAACCTAGAAGACGCGTTTCAACATCTGCAAGAGAAACATAATAAATTAATATACACAGAAATTAAAAGCCACATAATGCCTTTCAAGTTTGACTCGAACGGCCTCGTTTGTTGTTTATGCTCGAACGCGTTCGACAAGTTTAAAGTACTTCAGGAACATATGCATATACATTTCAGGAATTACATCTGCGATGTCTGTGACGCTGGTTTCGTCAACCAGGGCTGTTTGAATAGGCACAAGGATACCCATAAAAAAGGAACGTTTCCTTGTAATGTGTGTTCCAAAGTCTTTGACACGCATATCAAAAGGAAATCTCATGAGAAATTTGTTCATACGCAAAGTATAATGAACCGATGCGGATATTGCAATGAAGGCTTCAAAGAGCATTATTTGAAGGAAGAGCATTTAGCTAAGGTCCATGGCGTAAGTCCTAGAGTTAACAAATGCAATGCTTGCGAAAGAGTCTTTAGGACGCAGAAGAAATTGAGAGTGCACGTGAAGCGAGATCACTTGTTAGAAAAGAGGCATAAATGTACCGAGTGCGATATGAAATTTTTCGGCTCTAATGAGCTGAAGAATCATATGGTGAAGCACACCGGGGTTAAGCAGTTCCAATGTGACGTCTGTTTGAAGTGCTACGGACGCAGGACTACCTTGAAAGAACACATGAGAATTCATAATAACGATAGACGGTTTAAATGTGAACATTGCGGACAGACGTTTGTGCAGAAATGTAGCTGGAAGGGACATATGAAATCGAAACATGGAGAGTTTTTCTAG
Protein Sequence
MKITPVLHIQYLMFVKNRRNVTTRCNVKTESSTCILDSDSFKESFSLFWRGGEDRIQPKVVDHNQNANSDSAVILIVKSEDSETQNLDTEKETQHKVDSRIELSKHRNNLAEILKHSNATLILKMGKIGYRCAYCADEYPRPADLKKHTLETHGNKSDTVFKATTLSEYIVKLDITDLRCTLCHSSMDSLQVFQDHLISKHNRTIFTNVKSHIVPFKFDTEVLSCCLCLCQFDRFKNLQEHMHQHFRNYICNICGSGYVYMSCLTRHKHIHKKGKFPCSYCPKICDTNMKKKMHERSTHTHTNSRIVCGYCNEGFRDHKYKMLHLNKVHGVNVPTPQCNACNRSFDTAKNLRIHIRKYHLLEKCKRCTECDMKFFRSTELKNHMLTHTGEKKFQCKLLVSKVKEEIKDDPETTDSEADETLLSIKRALKRTERKTNRSVPEGRQSSREELKKHHHNLREILKCTNATPIFRRGGVGYMCSYCMKEFPDAADLKLHTLENHSPDGNTMIGSLRHFTLMSDYSMRLDVTGLRCILCYSDIINLEDAFQHLQEKHNKLIYTEIKSHIMPFKFDSNGLVCCLCSNAFDKFKVLQEHMHIHFRNYICDVCDAGFVNQGCLNRHKDTHKKGTFPCNVCSKVFDTHIKRKSHEKFVHTQSIMNRCGYCNEGFKEHYLKEEHLAKVHGVSPRVNKCNACERVFRTQKKLRVHVKRDHLLEKRHKCTECDMKFFGSNELKNHMVKHTGVKQFQCDVCLKCYGRRTTLKEHMRIHNNDRRFKCEHCGQTFVQKCSWKGHMKSKHGEFF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-