Ccur006385.1
Basic Information
- Insect
- Clostera curtula
- Gene Symbol
- -
- Assembly
- GCA_905475355.1
- Location
- FR997822.1:8787196-8792163[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.074 7.5 8.2 7.6 1 23 155 178 155 178 0.97 2 17 9.7e-05 0.0099 17.3 0.8 1 23 187 210 187 210 0.96 3 17 0.016 1.6 10.3 0.4 2 23 223 245 222 245 0.97 4 17 0.0019 0.19 13.2 1.1 1 23 254 277 254 277 0.96 5 17 0.0016 0.16 13.4 1.4 1 23 288 311 288 311 0.97 6 17 0.00013 0.013 16.9 0.7 2 23 340 362 339 362 0.97 7 17 0.00028 0.028 15.8 1.6 2 23 372 394 371 394 0.96 8 17 0.061 6.2 8.5 0.7 3 19 400 416 399 418 0.94 9 17 0.0013 0.13 13.7 0.3 2 21 424 443 424 446 0.95 10 17 0.01 1 10.9 1.2 3 23 456 477 454 477 0.95 11 17 8.1e-05 0.0083 17.5 4.5 1 23 482 505 482 505 0.93 12 17 0.018 1.8 10.2 1.7 2 23 517 539 516 539 0.97 13 17 0.1 10 7.8 1.2 1 23 561 584 561 585 0.93 14 17 0.017 1.7 10.2 1.7 2 23 615 636 614 636 0.97 15 17 7.7 7.8e+02 1.8 2.8 3 23 644 666 642 666 0.89 16 17 0.01 1 10.9 0.1 1 23 702 724 702 724 0.97 17 17 0.19 19 6.9 2.0 1 23 730 753 730 753 0.96
Sequence Information
- Coding Sequence
- ATGTACAATATGGATCTTACAATTAAAACGGAAATTAAAGTTGAAGATGAGGTGGAGTCCAGAAAAGATCCAACCTCCTTTTTGCCAGAGGAGCCAATGACATATGAGTTGAAGAAAAAGAAAAAAAAGAAGAAGAAGAAGAAGAAACAGGAAGATCCATTTAAAGATATAGATGAATCTGAAAATTTGAAGTTGCCAGTAGTTATAACAATTGACCCAGAGGTTACAATTAAAGTCGAGAATATTGAAGTTGAACTGGATTTCAATGATTTTACGGACAACAACGGTCTTCTACTAGAACGTCCTCAAAGCGAGGACAGTCAGGAACCCGCCATCAAAATAGAACCGCACAACCACGAGGCCACTCTTCTCACTTTCGAGAGCGTCATCAAGAAAGACGAAGACATATATGACGCGTACGACGACGATACTCCTTTAAACCAATTCCAAACCGCCCCAAACCACGTCTGCCAAATCTGTCACCTCATCTTCCAGTCCCATAAAACGCTAAGAATGCATCAGAAAAGAAAACACAAGATTTTTAGAACGTCTTTTAAACACATATGCGATTATTGTGGCATGTCTTACGAAATGAAGAACAGTTTAGCCGCTCACATAAGGAGGAAACACGGTCCAGGTTCTTTGCCAGATGATGGAGAGGAAAAGACTTGTGATATCTGCGCTCTAGTCTTCAAAGGGATTGCCAGGCTACGGATGCACATGAGGAGGAAACATGGCTCCTTCGAGGACTCCTTCAAACACGTCTGCCAAGACTGTGGCCTGACTTACGATAAGTATAGGAGTTTGATCGTCCACGTACAAAGGAAACATACTCCTCAGAAGCCAGTCATTGATCAATGGTACAGCTGCGTGTTCTGTCCGAAGATTTTTAACAAAAGAGAAACGTACGCTAGACATGTGCAAAGGAAACATCAGGTTTCGGAAGAGACAATCAAGAGAGAGCAACTTGATGAGGAGTACTTAAAAACTTGTAAGAATGAGGAAACTGGGGAGATTACTTGTAAAGAGTGTCCGCTAGTATTTTCTTCGGTCAACTTCTTGAAACTTCATATGAGGAGGAAGCATAACGCGTTACGGGAAGACTTTAGGCTCAAGTGTCGGATATGCAATTTGTCGTACAATAAGATTGAAAGTTTAAAGAGACACATTAGGAGAAAACATGATAGTGGTTCGTTCTGTGAGGTTTGCAACAAGCAGTTTGCGACTAGGGAAATGTATTTGAATCATTCGCATCTCAAAGTAATCAATGAGTGTTCGATTTGTGGGCTCATATTCGCGTCTGCGGGCGGTCTCTCCAAGCATATTCGGTGCACGCACAAAATCAGTACGCCTAAAACGATCTTCTGTCATTTATGTAACGAGGGATTCTACGACAAGCGACAACTTAAACCACATTTAATGAAAGTGCATTTCCAAGTTACTTACACGTGCAAGTTTTGCAGCAAAGTCTTTAGGAATAAGGAGAGCTATAGACGACACATCACGTTCAAGCACCCAGGCTTGTCGGAGTTCAAGAAAGAGGAACAGAAGTGTGATCAATGTTCGGAGAAGTTTTTAGACGAATTCGAACTCTGCCGCCATATAAATACTGCACACCGGCAGGAGAATGAGATCGCTCAAACTGAAATCAAACAAGAGGTTGTGGATATAAAGGATGTCTTCCAATGCACTAAGTGCCCGGAGAACTATGGGGCGTTTGACTTACTCCGAGCTCACTACGAACAAAAACACCACGAGATACAGTGTCAAATCTGTGGGGACATGTTGCCGGGATTGGAGTTACAGAAGCATATTAAAAGTAATCATACGGCGGTCGAAATGAAGTGTAGGTACTGCGAATTCAAGACTACGGCTAAAGTGAGTTTGACACAACATATGTTAAGACACAAAAATGCTTCAACACTGCACTGTGATTATACAAATTGTAAATATAAGACGTTTTATGAAGGTGCTATGGAACGGCATAAGCGGAAGCATGTGGATTTGGGTGTTAAGCTGCAATGTTCCCAGTGCCCGTTCCAAACTATGAACAAATATATATTGAAATATCATGAGGAAGCCCACGAGACTGGGAAGAAGAGATATATGTGCGACCAATGTGACTATGCAACGATACTGCCCGCTAATCTAGTACAACATAGATATAAGCATTCAACTGAAAAGCGGTTCAAGTGTGAAGTGTGCCCGTTCGCGACCAAGTACAATACGTCTCTGCGTTTCCACGTGAAGAAGAAACACTGTGATTTACCCACTTTTAGTTAA
- Protein Sequence
- MYNMDLTIKTEIKVEDEVESRKDPTSFLPEEPMTYELKKKKKKKKKKKKQEDPFKDIDESENLKLPVVITIDPEVTIKVENIEVELDFNDFTDNNGLLLERPQSEDSQEPAIKIEPHNHEATLLTFESVIKKDEDIYDAYDDDTPLNQFQTAPNHVCQICHLIFQSHKTLRMHQKRKHKIFRTSFKHICDYCGMSYEMKNSLAAHIRRKHGPGSLPDDGEEKTCDICALVFKGIARLRMHMRRKHGSFEDSFKHVCQDCGLTYDKYRSLIVHVQRKHTPQKPVIDQWYSCVFCPKIFNKRETYARHVQRKHQVSEETIKREQLDEEYLKTCKNEETGEITCKECPLVFSSVNFLKLHMRRKHNALREDFRLKCRICNLSYNKIESLKRHIRRKHDSGSFCEVCNKQFATREMYLNHSHLKVINECSICGLIFASAGGLSKHIRCTHKISTPKTIFCHLCNEGFYDKRQLKPHLMKVHFQVTYTCKFCSKVFRNKESYRRHITFKHPGLSEFKKEEQKCDQCSEKFLDEFELCRHINTAHRQENEIAQTEIKQEVVDIKDVFQCTKCPENYGAFDLLRAHYEQKHHEIQCQICGDMLPGLELQKHIKSNHTAVEMKCRYCEFKTTAKVSLTQHMLRHKNASTLHCDYTNCKYKTFYEGAMERHKRKHVDLGVKLQCSQCPFQTMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHRYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -