Ccur006459.1
Basic Information
- Insect
- Clostera curtula
- Gene Symbol
- -
- Assembly
- GCA_905475355.1
- Location
- FR997822.1:9783638-9785938[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.024 2.4 9.7 0.9 1 23 134 157 134 157 0.91 2 17 0.00017 0.017 16.5 4.0 1 23 162 184 162 184 0.98 3 17 0.0019 0.2 13.2 0.1 1 23 214 237 214 237 0.94 4 17 0.14 14 7.3 1.8 3 23 303 324 302 324 0.92 5 17 0.0007 0.071 14.6 1.2 1 23 330 353 330 353 0.92 6 17 0.043 4.4 8.9 2.0 2 22 357 377 356 377 0.92 7 17 0.023 2.4 9.8 1.3 1 23 385 408 385 408 0.95 8 17 2.3 2.4e+02 3.5 0.9 3 23 415 436 414 436 0.94 9 17 0.00057 0.058 14.8 0.6 2 23 449 470 448 470 0.96 10 17 9.5e-06 0.00097 20.4 2.1 1 23 476 498 476 498 0.98 11 17 4.7e-06 0.00048 21.4 0.4 3 23 536 556 535 556 0.98 12 17 0.0028 0.29 12.7 0.1 2 23 561 582 560 582 0.95 13 17 0.0013 0.14 13.7 0.9 2 23 599 621 598 621 0.97 14 17 2.7e-05 0.0028 19.0 0.6 1 23 627 649 627 649 0.98 15 17 0.0033 0.34 12.4 6.4 2 23 656 677 655 677 0.96 16 17 0.006 0.61 11.6 1.3 1 23 683 706 683 706 0.96 17 17 0.29 30 6.3 0.8 2 23 712 734 711 734 0.92
Sequence Information
- Coding Sequence
- ATGAACAATTGTGTCCTTGATCTGCAGTCCAAAGTTGACGACCTAAACAATCAGTTGGATGATAACATCGACTATGAAAATTCAAATATTATGATAATCTTAGAAAATGATAAAGAATTATGCGAGAGTATCATCAACACGGACAATACAACCACAGAAATAGTCCCAACTGCAATACCAAAAGTAAATTCCTTAGACACCGTAGCAAAACCCCAAGCACCACAAACTAATATTGAAGCGATAAAAAAAAAACTTGCTATAAATAAAGAAATTAAACTTTCTGCAACGATAGAAAAGTACATTGATACAGTTAAAACTCCCAATATCACTTTAAAAGAAGGCAAACTGCTTGTGAAGCCTCTAAATTCTTTGGCGGATACGACACCGCGTTACAACACGTACAAGTGCACGGATTGTTCAGAAATATTCACTTCTTATAGAATATTGAAGGAACACGAGAAAGCCAAACACAAAACCACGGTGTTCCATTGCCAGATCTGCAAGAAATCCTATAACTCGGCTCAATACTTGAATATACATTACAAAACTCACGAAGTAGAAAGTTGTAAGATTTGCAGAGAAATTCTGCCCGAACAAAACATAATGGACCATCTGAAAACGGTTCACGCTGACATGGTTTATCCGTGCAACGTCTGTGATTTAGTTTACTATAGCAAAGAATCTTTAGACGCACATGCAAAAGCCAGTCATAAAGTCGACACTAGTATCGGCTTATTTCAATGTTTAATGTGCTTTAAAAATTTTACCGAAATAAAGTTCAAAGAGCATAGATGCAATTTTTCATGCCCAGAGTGCCCAATATCAGCCCCTCATATACCTTGCGTTCACACACGTTTCTTGAAGTCTTTTAGGGATCAAATGTTGAGTCGCAGTAACAAAGCTAAGTGCATAGACTGCAAATACACGACAAGACGCAAAGAACATCTAATAGGGCACGCCAACCGCGAACATTTAAATCACCACCCGTTCACGTGCGCTGATTGTGGTCAACAATTCTACACCAAACTAAGTCTAAAAACACATTTAGTGCAATTCCATCAAGACCTTTGCTGCGCCTATTGTGATTTTAAGTTCAAAGATAAAAAGGTATTGGATAATCACCAGAAAATGTGCAAACTGGTGAAAAGGCAGTTCGCTTGTCATCTTTGTCAAGCTTCGTTCGATATTGAAAACGAATTTGAACGTCATCAGAAACTGAAGCACGACAAAGAAGTAAACGCTTGCAATCTATGTAAAAGTAAATTTCTATCTAAAGTGGACCTAGAAGACCACCATGCGCGAGTCCACGGCGGTATTCAATGCAAGAAGAGGCGAAAACACATTGAGTGCACACTCTGCGATAAATTCTTCAATAATCTAAAGGAAATGAAGGCTCACGAAAAACTACACGATGCCGATGAGACTTACCCTTGTAAATTATGTTCCAAAAGCTTTTCCAACCTAAGTAATCTTTATTTACACAATCGAAAGCACTACACTGTGACGGTAAAATGTCAGGAGTGTAGCCGAACGATGGCGGCGTCATTCTTCTCGCAGCACGCTGCAAAGTGTTCAAATAAAGACAAAACTGTTCTGGCTCATGGTTGTGAAGTGTGTGGAAAGTCTTACCGCTCAAAATCGTTACTTCGTGCGCATCAGGTTAAACACATAGATCCACAGCCGTGCCCGCTGTGCAATAAAACCCTCAAACCTGCTAGTTTAAGGAAACACATGGAGTCGGCGCATCCTGGTCCTAACCAAGTAAAAAAAACCCTTAACCCTCCCAAACAGATTAAATGTAATATCTGCAACCACGTCGTTAGGAAAACCATGGACTTGGAAGCTCATATGAACAGATATCACTTAAAGATCAAACCGTACGTTTGTAGCGTATGCAATAAGGCGTTCTGTGGACAGGCGCGACTGAACGAGCACATGGCGACGCACAGCGACAGGAATGTTTGCTTTTGCCAGATTTGTAACAAGAAGTTTGCGAATCGTGTCTGTCTGAAGATTCATTTCAGAATGCACACGGGAGAAACTCCGTATGAATGCGATATATGCGGCTCAAAATTCCGGTCGTCAAGCATAATGAAAACGCATAGGTTGAAAAAGCATTTGGAGAAAACTGTCAGTTGTCCCCTGTGTAACTACAAGTTCTTCTATGTTAGGGATATGAGATATCATTTCAAGAATGCACACTGGAGAGATAAGTCTAAGCCGTTCGACCCTCGACTGGTCCCGGAGCTTTCCAAAGAGTATTATCATTTGTTCGAGGATCGACGAATGCCTCAATTTTAA
- Protein Sequence
- MNNCVLDLQSKVDDLNNQLDDNIDYENSNIMIILENDKELCESIINTDNTTTEIVPTAIPKVNSLDTVAKPQAPQTNIEAIKKKLAINKEIKLSATIEKYIDTVKTPNITLKEGKLLVKPLNSLADTTPRYNTYKCTDCSEIFTSYRILKEHEKAKHKTTVFHCQICKKSYNSAQYLNIHYKTHEVESCKICREILPEQNIMDHLKTVHADMVYPCNVCDLVYYSKESLDAHAKASHKVDTSIGLFQCLMCFKNFTEIKFKEHRCNFSCPECPISAPHIPCVHTRFLKSFRDQMLSRSNKAKCIDCKYTTRRKEHLIGHANREHLNHHPFTCADCGQQFYTKLSLKTHLVQFHQDLCCAYCDFKFKDKKVLDNHQKMCKLVKRQFACHLCQASFDIENEFERHQKLKHDKEVNACNLCKSKFLSKVDLEDHHARVHGGIQCKKRRKHIECTLCDKFFNNLKEMKAHEKLHDADETYPCKLCSKSFSNLSNLYLHNRKHYTVTVKCQECSRTMAASFFSQHAAKCSNKDKTVLAHGCEVCGKSYRSKSLLRAHQVKHIDPQPCPLCNKTLKPASLRKHMESAHPGPNQVKKTLNPPKQIKCNICNHVVRKTMDLEAHMNRYHLKIKPYVCSVCNKAFCGQARLNEHMATHSDRNVCFCQICNKKFANRVCLKIHFRMHTGETPYECDICGSKFRSSSIMKTHRLKKHLEKTVSCPLCNYKFFYVRDMRYHFKNAHWRDKSKPFDPRLVPELSKEYYHLFEDRRMPQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -