Ccur018260.1
Basic Information
- Insect
- Clostera curtula
- Gene Symbol
- -
- Assembly
- GCA_905475355.1
- Location
- FR997815.1:4784377-4787797[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.05 5 8.7 0.2 1 23 67 90 67 90 0.92 2 20 0.75 76 5.0 0.1 2 23 117 139 116 139 0.93 3 20 0.0079 0.81 11.2 4.0 2 23 162 183 161 183 0.97 4 20 0.067 6.8 8.3 0.6 1 23 187 209 187 209 0.95 5 20 0.003 0.31 12.6 0.7 1 23 214 237 214 237 0.96 6 20 0.0055 0.56 11.8 1.7 2 23 245 267 245 267 0.94 7 20 0.00048 0.049 15.1 2.3 2 23 275 297 274 297 0.96 8 20 0.00012 0.012 17.0 4.0 1 23 303 325 303 325 0.98 9 20 0.00036 0.037 15.5 3.2 1 23 331 353 331 353 0.99 10 20 0.00022 0.022 16.2 4.1 1 22 359 380 359 383 0.92 11 20 0.019 1.9 10.1 0.3 1 23 440 463 440 463 0.95 12 20 0.65 66 5.2 0.1 2 23 490 512 489 512 0.93 13 20 0.0018 0.18 13.3 4.0 2 23 535 556 534 556 0.97 14 20 0.09 9.1 7.9 1.5 1 23 560 582 560 582 0.93 15 20 0.011 1.1 10.8 1.0 1 23 587 610 587 610 0.92 16 20 0.025 2.6 9.7 0.8 2 23 618 640 618 640 0.96 17 20 0.001 0.1 14.1 2.3 2 23 648 670 647 670 0.95 18 20 0.00011 0.011 17.1 3.5 1 23 676 698 676 698 0.96 19 20 6.1e-05 0.0062 17.9 2.8 1 23 704 726 704 726 0.99 20 20 0.00016 0.016 16.6 5.4 1 23 732 755 732 755 0.97
Sequence Information
- Coding Sequence
- ATGTGTCTACTTGCAAAGGCAGGTTCCCATCCTTACGCGCAGATAGAAAATACAGTCTCTAAAAAGGTATATTCAGTGGTACGAAACAAAGACTTACATAATTTCAAGATACACGAGGTGGAAAAGCATCGACATAATATTCGTCAGATTTTGCAATGTAGTAACGCCACTCCTATCCGCCGATTTATAGGCATCGGGTACGCTTGCTGTTTCTGCGGCAATGAGTACCCGGAGCCGGCGGACCTTAAAAAACACACGATAGAAGACCATAACGAAAAATCCATAATGAAATTCATGCGTGGCCAAAGAATGACGTCGTACCTAGTCAAATTGGACATAACTCAACTTAAATGTAAACTATGCAATACAAATATTGATAACTTAGAACGGCTCATTGACCATATTATCAACATACACCAGAAAAGAATCTTCACTGACATCAAAAGCCACATTGTACCATTCAAATTTGACGCCGAGTTTCTTAGATGCTTGTACTGTGACAACGTCTTCAACAAGTTCAAGCATTTTGTGCAACATATGAACAAACATGTCAGGAATTATATTTGCGACTACTGTGATGCAGGCTTCGTCAATAAGCAAACCATTATGTGTCACATCGAAACCCACAAAACGGGTACTTTCAAGTGCTCCCTTTGCCCTAAAGTCTTTGATACGCTTCAGAAACGGAAGATACACGAGAAAGTGGTTCACATTCGGGGAAACTCAGTGAGGAAGTGCCCTTACTGTCCGCAGAGATTCAGCCGTTACAATCACCGGGATGATCATATGGTCAAAGTGCACGGTGTACTGTTGAAAAAGATAAAATGCCACGCGTGTGACAAAACGTTCGATAATATGAACCAATTGAGGATTCACACAAAGCGAGATCACTTGATGGAGAGAAAGCACAAGTGCACTGAATGTGATATGACTTTTTTTACTCTATTCCAGCTGAAGAATCATATTCTTAAGCATACGGGGGTTAAGCCGTTCCAATGTGACGTATGTTTGAAGTTCTACGGAAAGAAACACACGTTAAAGGAACACATGAGGATTCATAATAACGATAGACGGTTCAAATGCGAGCACTGTGGGCAGACTTTTGTGCAGAAATGTAGTTGGAAAGGACACATGCGAAATCGTGCTCACCTTTACGCGCAGATAGAAAAAACAGACCCGAAAAAGGTAAATTCTGTAGACCGAAACAAAGACTTACAGAATTTCAAGATAGCCGAAGTGGAAAAGCATCGTTATAATATTCGTCAGATTTTGCAATGCACTAATGCCACTCCGATACGCCGTCAAGTAGATATCGGGTACGCTTGCTGTTTCTGCGGCAGTGCGTACCCGGAGCCGGCGGACCTTAAAAAACACACAATAAAAGACCATAACGAAAAATCCATTATGACATTCATGCGTGGCGAAAGAATGTCCTCGTACCTCGTTAAATTGGACATAACCCACCTTACATGTAACCTGTGCAATACTAATATAGATAGCTTAGAAAAGCTCATCGACCATCTCATTAATGTACACCAGAAAAGAATGTTCACTGACATCAAAAACCACATCATACCTTTCAAATTTGACAACCCAGATCTCAGGTGCGTCTATTGTAACAACGTTTTCTACAAGTTCAAGAATCTCCAGCAGCATATGCACACACATTTTAGGAATTACGTGTGCAAAAACTGCAATGCAAGCTTCGTTACCAAACAAGTCATTACTTGCCACATGGCAACGCATAGAATCGGTACTTTCAAGTGCGGTACATGCCCTAAAGTCTTCGACACGCTACGGAAAAAGAAAAGTCATGAGAAAGCTGTTCACAAATACGCACACTTGTTGAGGACGTGCACTAACTGTTCACAGAGGTTCACCACTGGCAATAAGCTAGACGAGCATATGGCAAAAGTGCACGGTGTACAGTTGAAGAAGTTGAATTGTCACGCCTGTGATAAAACGTTCGATAATATGACCCAACTGCGGATTCACACGAAGCGAGATCACTTGATGGAGAGAAAGCACAAGTGTACTGAGTGTGATATGAGTTTTTTCACATCAGATCTGCTGAGGAAACATACGGTAAAACACACTGGGGCTAAGCCGTTCCAATGTGACGTCTGTTTGAAGTGCTACGGACGCAGGAATACTTTGAAAGAACACATGAGAATTCATAATAACGATAGACGGTTTAAATGTGAACATTGCGGACAGACGTTTGTGCAGAAATGTAGTTGGAAAGGGCACATGCGAAATCGTCACGCAGAATTTTTATAA
- Protein Sequence
- MCLLAKAGSHPYAQIENTVSKKVYSVVRNKDLHNFKIHEVEKHRHNIRQILQCSNATPIRRFIGIGYACCFCGNEYPEPADLKKHTIEDHNEKSIMKFMRGQRMTSYLVKLDITQLKCKLCNTNIDNLERLIDHIINIHQKRIFTDIKSHIVPFKFDAEFLRCLYCDNVFNKFKHFVQHMNKHVRNYICDYCDAGFVNKQTIMCHIETHKTGTFKCSLCPKVFDTLQKRKIHEKVVHIRGNSVRKCPYCPQRFSRYNHRDDHMVKVHGVLLKKIKCHACDKTFDNMNQLRIHTKRDHLMERKHKCTECDMTFFTLFQLKNHILKHTGVKPFQCDVCLKFYGKKHTLKEHMRIHNNDRRFKCEHCGQTFVQKCSWKGHMRNRAHLYAQIEKTDPKKVNSVDRNKDLQNFKIAEVEKHRYNIRQILQCTNATPIRRQVDIGYACCFCGSAYPEPADLKKHTIKDHNEKSIMTFMRGERMSSYLVKLDITHLTCNLCNTNIDSLEKLIDHLINVHQKRMFTDIKNHIIPFKFDNPDLRCVYCNNVFYKFKNLQQHMHTHFRNYVCKNCNASFVTKQVITCHMATHRIGTFKCGTCPKVFDTLRKKKSHEKAVHKYAHLLRTCTNCSQRFTTGNKLDEHMAKVHGVQLKKLNCHACDKTFDNMTQLRIHTKRDHLMERKHKCTECDMSFFTSDLLRKHTVKHTGAKPFQCDVCLKCYGRRNTLKEHMRIHNNDRRFKCEHCGQTFVQKCSWKGHMRNRHAEFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -