Ccur028742.1
Basic Information
- Insect
- Clostera curtula
- Gene Symbol
- -
- Assembly
- GCA_905475355.1
- Location
- FR997823.1:1227956-1232620[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.2e-07 2.2e-05 25.6 3.8 1 23 146 168 146 168 0.97 2 10 2.4e-06 0.00024 22.3 1.0 1 23 173 195 173 195 0.98 3 10 8.6e-09 8.8e-07 30.0 1.8 1 23 200 222 200 222 0.99 4 10 1.2e-05 0.0012 20.1 1.6 1 21 226 246 226 247 0.95 5 10 7e-05 0.0071 17.7 1.5 2 23 259 280 258 280 0.96 6 10 5.5e-06 0.00056 21.2 1.3 1 23 286 308 286 308 0.97 7 10 2.8e-06 0.00029 22.1 0.6 1 23 314 336 314 336 0.98 8 10 1e-06 0.0001 23.5 5.7 1 23 342 364 342 364 0.98 9 10 6.1e-05 0.0062 17.9 2.1 2 23 371 392 370 392 0.97 10 10 0.00037 0.038 15.4 6.2 1 23 398 421 398 421 0.96
Sequence Information
- Coding Sequence
- ATGGAATTGGGGTCTGTTAAAATCAAGGAGGAGCCGGCTGATGTTGACGAAAACAGTGCAAATGTACAGTTATTGCCGACGCAATCTGCCGATCCGCATAGGCCGGGTATATTAAAAAATAATGCTGAGAGCCTTCTCCCTGAAACATGTATCAAAACCGAAATTTCAAGTGAGTTCCCTGATGATAATGCGGTGGAGATTAAAACAGAGAGCAATGATGAAGATGACATACCACTAACTAAATACATCACAATTGAGGTGAAAGCTGAACCATGCGAGGGAGAAGATGGTTTTGACAGCTGGAAGAATCCAATTTCCCCCGAAACCATCTTCATGCTTCCACCTTTCAGAGGGCCAGTGACACCTCCGGTGTTGCAAAAGTCCTTGAACGACGGTAACCGCACCAAAACGCCATTCTCCATTCCAGATACGGAACACGTGTGTAAAATCTGCACAAAAGTATTCTCCAACCGCGGCAACCTACAAAGGCATATGCATATCCACTCCAAAGAGCTATATAGCTGCAACGTTTGCACCAAAACCTTCCGCAGGAAAGACTGGCTCGACAAACACGCCATTACGCACAACCATCGTGGCTACCAGTGCAATCAGTGCGACAAGGCCTTTAAAACTCAATCCAACCTTTCCCAACACGTTCGAACCCACACAGAACCGTACTCTTGCGTGCTTTGTCACAAAAGCTTTTCCCAGAAGATTAACCTCATAAAACACCAGAGCAAACCTTCCTGTAAAGCGCCAAGAACAGGCCCTTTGGTGTGCGAGTTCTGCAAGAAAGAGTTTACCAAGGAGTATCTGTTGAAAAGCCACCTTAAGAGCCACGATACGGCGAAACCCTTTTCTTGTGATATGTGCGGGATGAACTTCAAATATAAGTCCACGTTAATGCGACATGTGCAGCTCCATAACGGGGACAAACCGTACTCGTGCACCCAATGTGACAAGACCTTCACGAGCCTTGGTCTTCTGAAGCCTCACATGAGGGTGCACACGGGGGAAAAGCCATATGTTTGCCCAATTTGCAACAAACGGTTTTCCCATAAACATAACATGCAACGACACCTGTCTCGGCATGAGAAGGTGAAGCACACGACCTGCGACGTGTGTCACAAGGAGTTCCCCAAGGAATCCCGCCTTAGGTACCATATGCGGATCCACGTTAAGGAAAAGTACTTTTGCTGTGCTATCTGTCCTAAAAGGTTTTCGCATCGGCAGAATGTGTTGAGGCACTATAGGAGGAAGCATCCGGATGAGACCTACGATTGCAAGGACACGGATGCTTCGATCGCTCATAAGATTTGGAACGAAGTCATAAAAAGCAAATACGAAGAGGAACCGCTAGAGATTCTGGGCTGA
- Protein Sequence
- MELGSVKIKEEPADVDENSANVQLLPTQSADPHRPGILKNNAESLLPETCIKTEISSEFPDDNAVEIKTESNDEDDIPLTKYITIEVKAEPCEGEDGFDSWKNPISPETIFMLPPFRGPVTPPVLQKSLNDGNRTKTPFSIPDTEHVCKICTKVFSNRGNLQRHMHIHSKELYSCNVCTKTFRRKDWLDKHAITHNHRGYQCNQCDKAFKTQSNLSQHVRTHTEPYSCVLCHKSFSQKINLIKHQSKPSCKAPRTGPLVCEFCKKEFTKEYLLKSHLKSHDTAKPFSCDMCGMNFKYKSTLMRHVQLHNGDKPYSCTQCDKTFTSLGLLKPHMRVHTGEKPYVCPICNKRFSHKHNMQRHLSRHEKVKHTTCDVCHKEFPKESRLRYHMRIHVKEKYFCCAICPKRFSHRQNVLRHYRRKHPDETYDCKDTDASIAHKIWNEVIKSKYEEEPLEILG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -