Ccur019039.1
Basic Information
- Insect
- Clostera curtula
- Gene Symbol
- -
- Assembly
- GCA_905475355.1
- Location
- FR997815.1:12935261-12937576[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.2e-06 0.00042 21.6 4.1 1 23 8 31 8 31 0.95 2 20 0.0031 0.31 12.5 0.3 2 23 37 59 36 59 0.94 3 20 3.1e-05 0.0031 18.8 0.3 2 23 68 90 68 90 0.97 4 20 2.2e-06 0.00022 22.4 2.1 2 23 99 121 98 121 0.95 5 20 0.0004 0.041 15.3 3.7 2 23 129 151 129 151 0.97 6 20 2.3e-05 0.0024 19.2 1.0 2 23 160 182 159 182 0.96 7 20 1.2e-06 0.00012 23.2 1.8 1 23 188 211 188 211 0.98 8 20 4.6e-06 0.00047 21.4 2.9 1 23 251 274 251 274 0.98 9 20 0.00054 0.055 14.9 1.7 1 23 300 323 300 323 0.97 10 20 1.2 1.2e+02 4.4 0.9 2 21 331 350 330 351 0.92 11 20 0.00059 0.06 14.8 2.5 2 23 360 382 360 382 0.96 12 20 0.0056 0.57 11.7 7.0 1 23 403 426 403 426 0.97 13 20 4.3e-05 0.0044 18.4 0.6 2 23 433 455 432 455 0.96 14 20 2.4e-05 0.0025 19.1 1.7 2 23 462 484 461 484 0.94 15 20 0.1 10 7.7 3.6 1 23 490 513 490 513 0.95 16 20 0.19 19 6.9 7.1 2 23 521 543 521 543 0.95 17 20 0.00078 0.08 14.4 0.2 1 23 550 573 550 573 0.97 18 20 0.84 85 4.9 3.4 1 23 580 603 580 603 0.83 19 20 0.042 4.3 9.0 2.2 6 23 622 640 618 640 0.89 20 20 2.6 2.6e+02 3.3 0.8 1 12 690 701 690 704 0.88
Sequence Information
- Coding Sequence
- ATGTACCATAGCCAACTAGACTATGTCTGCGACTACTGCTCTAGAACCTTCACTAGGAAATACAACTTGCAAACGCACATCGACAACTGCCATATCAACTCATCATGCTACTGCGACATTTGCGAACAGCGCTTCGGCAGTCCCGCGGGATTGCAGCTACATTTAACCCGGGGACATAATTCTTACAGTCAACCGTACCCAGAATGTGACCTTTGTGGCCGAATATTTACCAGAAAACAAAACATCATGTCTCATATGATCACGGTGCACCTACAAGGCGTCGGCCCACAGATCCGTTGCCAATTATGCCAAAAGACATTCACGACGGAGCGAAATTTAAAACGACACATGAACCAACTTCATAACCCCGATGTAGAGTACCCAACGTGCAATGATTGCCACAAAATATTCCGCGGGAAACAAACACTAATTACACACATACATACAGTTCACAACTCGAAAGATAAACACGCAATAAAATGTCAGCTATGCGAAAAAGTTTACACAAACACAAGGAATCTAAAACGACACATCGAAATGTTTCACGGTCTCAAAGGTGAATTTAGGTGCGATATTTGCCCGAAAGTGTACACATCAAATCAAAGTTTGCGGCGGCACACGAAAACTAGACACAGCACAGACCAGAGCGATCAATTCCGATGCGATTTGTGCTCGATAATAATCGTCGGTAGGGATAATTTCGACTGCCACGTCCAATACCATCACGCAGCCACGTATACCGATTACGATTTCGTCTGTGATACGTGTCATAAAAGCTATCGCGATGAGACGAGCTTACGCAAACATATCAAAACTGAGCATTCGTTTAAAACGTTCTACAAATACTGTAAGCAGTCTTTGTTGAAACACTATGCTTTAGAAACGGACAAAAACCTTTACTCTTGCGAATATTGCCACAGTCCGTTTCCAAGCGTTTATGAGCTGAAGGATCATATGAAAAACTTTCACGACATAGAATACGCTTTGTCGACATGCAATGTGTGTTTCAGCAAGTTCTATAGCAAAGAGACAATGCTGTCGCATAAAAAAGTATGCTTACCGCCACCTAATGTCAACTCTTGCAGTCATTGCGACAAATTGTTCACAGACAAATCCAGTTTAGAATTCCACATCAGAATATTTCACCCTCAAGCCCAAATCGCAGACTCTAATATAAGTTCAACTAACGATGAACCAGGTTCGTCGTATAAATGCAAGCATTGCAATAGGATATATTATAGCGACAGATCTCTTAAACACCATATTAAGTTAAAACATACGACTGATGAGGCGGTAGAGTGCGAAATTTGCTCAAAGATATGTAGTAATAAATATTATCTCGCTTCGCACATGAAAATCGTGCATAGCGATAACTCGTTGTCGCGATGCGAGTATTGCGACAAAGAGTTTAAATCTAAAAGAAATATTAGACGCCACATTGAGTATACGCATTTAGGTATGCAGAGACACAAATGTATTGAATGCGAAACGCTTTTTAAAGAGAAACGGAGCCTCAGGAAACACGTTAGGTCGAAACACCCGAACTCTGCAACATTTCCGCAATGCCACATTTGCCATAAAAGATTCGAGTCCGCGAAGTCTTGCAAGATACATTTGAAGTTGTTGCATTCGATCAACATGAATACATATCCTTGCCACTTATGTTCAGTTTCTTTCGGTTCCAACGAAGCTTTGGCTATACATTTAGAAACTAAACACTTGGCGGAAGACGAGATTTACAAGTGCGAAGTGTGCAACTTAGTGTTCAAGGGACATGAGAAGTTCGACGGCCACAACGACACCTGCCACGTTAACTTGGCCGTAACTGTGGCTAAACAAAAGGTGTTACCTAGGTGCATATTGTGCATAAAGGACTTTAGCACGAGGAAAACGTTGAAAAGACATATTAAGAAGTTCCACGCCGAATTTGAGGTTGACGAACTAGTGAACTTTGGCGCCAGGAACCAAAACTTTGGCGTTGATTGTGATGAATGCATCAAAAGCTTTGGCGACATTCACATCAATAACGTGTATTTGAAATTGAAGCATTTGAGAGACTCCGTGATCTTCACTTGTAGTACGTGCAATACCTCTTATAATTCAGTGGAGTTCTCCATTATTAAATATAGGATTAGTAACGGGGATTCTTGCAAGGGGAAGATGATTCTGAGTGAGTTGTGCACGGCTGAAATGAGTGACGAGGAGCAAACATTTTCTGGCTTTGGGTCCCTACATGATATGCTTCCGGAGAGCACTATTAGTGACGCGAAATTGCAGCCGGATGTAGAGATTAAATCGGAGCCAATGTCGCCGTAA
- Protein Sequence
- MYHSQLDYVCDYCSRTFTRKYNLQTHIDNCHINSSCYCDICEQRFGSPAGLQLHLTRGHNSYSQPYPECDLCGRIFTRKQNIMSHMITVHLQGVGPQIRCQLCQKTFTTERNLKRHMNQLHNPDVEYPTCNDCHKIFRGKQTLITHIHTVHNSKDKHAIKCQLCEKVYTNTRNLKRHIEMFHGLKGEFRCDICPKVYTSNQSLRRHTKTRHSTDQSDQFRCDLCSIIIVGRDNFDCHVQYHHAATYTDYDFVCDTCHKSYRDETSLRKHIKTEHSFKTFYKYCKQSLLKHYALETDKNLYSCEYCHSPFPSVYELKDHMKNFHDIEYALSTCNVCFSKFYSKETMLSHKKVCLPPPNVNSCSHCDKLFTDKSSLEFHIRIFHPQAQIADSNISSTNDEPGSSYKCKHCNRIYYSDRSLKHHIKLKHTTDEAVECEICSKICSNKYYLASHMKIVHSDNSLSRCEYCDKEFKSKRNIRRHIEYTHLGMQRHKCIECETLFKEKRSLRKHVRSKHPNSATFPQCHICHKRFESAKSCKIHLKLLHSINMNTYPCHLCSVSFGSNEALAIHLETKHLAEDEIYKCEVCNLVFKGHEKFDGHNDTCHVNLAVTVAKQKVLPRCILCIKDFSTRKTLKRHIKKFHAEFEVDELVNFGARNQNFGVDCDECIKSFGDIHINNVYLKLKHLRDSVIFTCSTCNTSYNSVEFSIIKYRISNGDSCKGKMILSELCTAEMSDEEQTFSGFGSLHDMLPESTISDAKLQPDVEIKSEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -