Ccur032000.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Clostera curtula
Gene Symbol
-
Assembly
GCA_905475355.1
Location
FR997806.1:16150201-16154124[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.046 4.7 8.8 0.0 1 23 45 67 45 67 0.95
2 17 0.039 4 9.1 6.5 1 23 88 110 88 110 0.96
3 17 6.8e-06 0.00069 20.9 0.1 1 23 134 156 134 156 0.92
4 17 0.98 99 4.7 0.7 5 23 164 183 161 183 0.91
5 17 6.1e-05 0.0062 17.9 0.7 1 23 296 318 296 318 0.96
6 17 3.6e-05 0.0037 18.6 0.4 1 23 324 346 324 346 0.97
7 17 0.00024 0.025 16.0 1.5 1 23 352 374 352 374 0.97
8 17 1.7e-07 1.8e-05 25.9 0.4 1 23 380 402 380 402 0.99
9 17 6.7e-08 6.9e-06 27.2 0.1 1 23 408 430 408 430 0.99
10 17 3.5e-05 0.0035 18.7 5.3 1 23 436 458 436 458 0.97
11 17 8.2e-06 0.00083 20.6 1.0 1 23 464 486 464 486 0.97
12 17 0.045 4.6 8.9 1.3 2 23 493 517 492 517 0.93
13 17 8.4e-05 0.0085 17.5 3.2 1 23 526 549 526 549 0.95
14 17 0.031 3.1 9.4 0.2 1 23 554 577 554 577 0.97
15 17 0.031 3.2 9.4 0.1 2 20 581 599 580 601 0.94
16 17 5.7e-05 0.0058 18.0 4.4 1 23 630 652 630 652 0.98
17 17 0.00022 0.022 16.2 1.5 1 23 669 692 669 692 0.96

Sequence Information

Coding Sequence
ATGATGGATTCGCAAGTGATTCCAGCTAGCAATGAATGCTCAGGATCACTGTTCTCAAGTAACAATAACAACGTTCTTATCGTCGGTTCCAAGAAACGAGTACTTTTGGTGAAAGTTAATAAAATTGAGATTTTCCCTTGCAACCTTTGTCCAAAACTGTTTGCTGATGTTCTACTTATGGAGAAACATATTGAGGATCATGAGAAACAATTTAAAGAACATTTGTCTAGTGCAATTGTGGTGTTGGAGCGAATTGAGATACATCAATGTGAGCAATGCCCTCAATGCTTCCACACCAAAAGGGACCTTGTGCTGCACAATTTGAAGCACATACATCAGAACATAAAAACCGCTAAGACCTCTAAATCGACACTGGAAAATGACAACATCACAAAGCCATACAAGTGCCCAGACTGCGACTACAGCTTTGCAGTTGAAAGCAACCTCCAAGCGCATTCTGTACTCCACAAACCCTACCCTCACGTCTGTCATTGCGGGGTCGGATACTACAGGAAACAGGACCTACTGAGCCACGAGGAGATAGTCCACACCAGGACCAAGACGCCCTGGCAAGCCAAAACCAAATACAAAGGCGCGTACGAGATAAAAGTAGAGACGGAACCAAACACGAAAAGCATAGGACCTAAACTGAGGCCCGAGTTGCTCTTGAAGAGCCGCATTAACAAGAAACCGAAGCCCCAGCCGAAGGCCTTCGATGGAATGCTGCTGGTGGAGAAGGAAAACAGAAAATTCTGTTACAATGATACATACACAAAAGAGGTCGAGATTCCTAAACGTATCAAGAAGCTTAAAAGCGGTGTAAAACGGCAGCGTCGGCCTGTAAACCACCCAAATATTGATATACAGGTGACCAATGATAGAAGGTTTGTTTGTCCGGTTTGCAACAAGCAGTTCAGCCAAAAAGAATACGTATACAGACATTACGTCATCCACACTGGAGAACGCCCTTACGCGTGTGACATCTGTGATAAGAGATTCCATCAACCCGCTGGTCTATACAATCACGTAAAAATCCACATTGGCAAAAAGGAGTTCTTCTGCAGGTTTTGTGAAAAGGCGTTCTTTAATTCCTCTGCATTAATGCTCCACGAGCGAACGCACACCGGGGAAAGGCCTTACAAGTGCGGCATTTGCGAGAAAGCCTTCAGCGACCCGTCGGCCTACAAGAGGCACGAGCGGACACATACGGGCGACAAACGGTATCAATGTCCTTACTGCCCAAAAGCATTCACGGACGCCAGCGGCCTTATAGCCCACAGAAAGAGACATATAGGCGAAAAGACACATCACTGTGATGAATGTGACAAATCCTTTTTCACTAGAAGCGCCTTAACGGTTCACAAGAAGACGCACACTGACGTGAAAAACTTCACTTGTGACTACTGCAACAAGAGTTTCCAAATGAAAAGTAACTTGGTGCTTCATATAATTCAGCACATGGGCCTCGGGAAAACTAAATGTAAATACTGTGAGAAATATATTAGTAGTAGTAGTAGTAGTAATATGAATGCCCACATCAAACGCACACACAAAGACAAATTCGTAAAGTTAAGACACGCGTGTACAACTTGCGGCAAGAGGTTTCCTCGAGTGAAGGATTTGACAAAACATTTTCGATCGCGCCATATAGCGACCAAATACGAATGCGACTATTGCGGAGACAAGTTTGCTGCGAAGAAGATATTGAGAGTGCACATACTTACGCGGCACGTGTGCATAAAGTGTGAACAGTGTCATGTATTTTTCCCATCGTTGGTCGCGCTCAATGCGCATAGAGTGATGAAGAAGTGTGCGGAGTGTGGGGAAGAAGTGTTATGCAATGGGCTTGAAAGAATTCATAGAATGCAGCACAAAGTGACAGTCAAACATGAGTGTGAAGTGTGTGAAAAAGTGTGTTATAACATGAGCGATCTAAAGAGACATCGGCGTACCCATGCCCCTAAGCCTCTAGTTTATACGAGTGCTGTAGATAAATTCAGTACATACGATTGTAACGTTTGCCTAAAAGAATTTGCTAGGAAAAGGAACCTCATAATGCATATAGACCGATGTCATAACGACGAACAATACGTGTAG
Protein Sequence
MMDSQVIPASNECSGSLFSSNNNNVLIVGSKKRVLLVKVNKIEIFPCNLCPKLFADVLLMEKHIEDHEKQFKEHLSSAIVVLERIEIHQCEQCPQCFHTKRDLVLHNLKHIHQNIKTAKTSKSTLENDNITKPYKCPDCDYSFAVESNLQAHSVLHKPYPHVCHCGVGYYRKQDLLSHEEIVHTRTKTPWQAKTKYKGAYEIKVETEPNTKSIGPKLRPELLLKSRINKKPKPQPKAFDGMLLVEKENRKFCYNDTYTKEVEIPKRIKKLKSGVKRQRRPVNHPNIDIQVTNDRRFVCPVCNKQFSQKEYVYRHYVIHTGERPYACDICDKRFHQPAGLYNHVKIHIGKKEFFCRFCEKAFFNSSALMLHERTHTGERPYKCGICEKAFSDPSAYKRHERTHTGDKRYQCPYCPKAFTDASGLIAHRKRHIGEKTHHCDECDKSFFTRSALTVHKKTHTDVKNFTCDYCNKSFQMKSNLVLHIIQHMGLGKTKCKYCEKYISSSSSSNMNAHIKRTHKDKFVKLRHACTTCGKRFPRVKDLTKHFRSRHIATKYECDYCGDKFAAKKILRVHILTRHVCIKCEQCHVFFPSLVALNAHRVMKKCAECGEEVLCNGLERIHRMQHKVTVKHECEVCEKVCYNMSDLKRHRRTHAPKPLVYTSAVDKFSTYDCNVCLKEFARKRNLIMHIDRCHNDEQYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-