Ccur018245.1
Basic Information
- Insect
- Clostera curtula
- Gene Symbol
- -
- Assembly
- GCA_905475355.1
- Location
- FR997815.1:4699970-4703898[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.049 5 8.8 2.2 1 23 59 81 59 81 0.98 2 28 0.0011 0.11 13.9 0.8 2 23 152 174 151 174 0.96 3 28 0.00077 0.078 14.4 5.2 1 23 179 202 179 202 0.98 4 28 0.00015 0.015 16.7 1.7 1 23 206 229 205 229 0.95 5 28 0.1 11 7.7 1.7 2 23 232 254 231 254 0.95 6 28 0.66 67 5.2 0.3 2 20 260 278 259 280 0.92 7 28 0.0034 0.34 12.4 3.6 1 23 329 352 329 352 0.96 8 28 0.0002 0.02 16.3 0.3 1 23 425 448 425 448 0.97 9 28 0.00033 0.034 15.6 0.6 1 23 453 476 453 476 0.96 10 28 6.8e-05 0.0069 17.8 0.1 1 23 482 505 482 505 0.92 11 28 0.00012 0.012 17.0 0.6 2 23 511 533 510 533 0.97 12 28 0.0022 0.22 13.0 4.1 1 23 537 560 537 560 0.97 13 28 0.0012 0.12 13.8 1.9 1 23 605 627 605 627 0.97 14 28 0.17 17 7.1 0.0 3 23 656 677 655 677 0.92 15 28 0.016 1.6 10.3 2.0 1 23 697 720 697 720 0.96 16 28 0.019 1.9 10.1 3.9 2 23 726 748 725 748 0.94 17 28 0.00013 0.013 16.9 0.6 1 23 753 776 753 776 0.96 18 28 0.0043 0.44 12.1 0.2 2 23 779 801 779 801 0.92 19 28 0.037 3.7 9.2 0.8 2 20 810 828 809 830 0.93 20 28 0.00052 0.053 15.0 2.5 1 23 882 905 882 905 0.96 21 28 0.31 32 6.2 0.5 2 23 933 955 932 955 0.94 22 28 0.0017 0.17 13.4 0.7 2 23 978 1001 977 1001 0.95 23 28 0.001 0.1 14.1 0.3 3 23 1008 1029 1007 1029 0.94 24 28 0.015 1.5 10.4 2.4 2 23 1034 1056 1033 1056 0.93 25 28 0.016 1.6 10.3 1.4 1 23 1061 1084 1061 1084 0.97 26 28 0.00012 0.012 17.0 4.1 1 23 1088 1111 1088 1111 0.97 27 28 0.0017 0.18 13.3 0.4 2 23 1118 1139 1117 1139 0.96 28 28 7.4e-06 0.00075 20.8 1.4 1 23 1145 1167 1145 1167 0.98
Sequence Information
- Coding Sequence
- ATGCATGTCCTCCCGTGCCCTGTCTTTGTTGACTCTGAATTCTACAATCGAGAAAATTTCTTTACAGATTCCGAAACAGAGCGGACAAAGAACAGTGGCAATTACCACAGGAGGCGTAACCTACGCATACTATTCAACAATACCACGCTAATACCGTTCAAATGGCGCAGGAAATACGTGTGCTTTTTCTGTGGCGAGGATTGTTATGACCGCGATATGCTAGTATACCACACTCAGAAACACGGTCTGTGCTGCGAGAAAGACCGACCTCTTAGGCTGGTCAAGGCGCCAGATAGTGAAATCAAAATTGATGTATCTGATATCAATTGTCTGATATGCTCAGAGAACTTTCTTACTTTCGAAGATATCGTCGATCATCTAATACAGAAACATAACCTCCCTTACAATAAAGATGTTAAGCTTATGGTGACTACGTATAGGCTAGTTGATTTGAGATGCTTGCTTTGTAGTAAACAGTTCACATTCTTAGCGAAACTCATCACTCATATGAACACTGAACACCCGGTCGATTGCTTCCAATGTCACAAGTGCGAACAGAAATTTAATAAAAAACGCGACTTAGGATCCCATTTGAGGACTTTCCACAAAAGCTGTCATCCGTGCGTCAAATGTGATTTATCATTTCCTACTAGGTCAGCCTTACAAGCGCATAGGACTACCGCTCATCTCTCATCCTGTAACATCTGTTTCCAAACCTTCACCACAGACGTGAAAAGGCTCAAACATATGACTAGAGACCACTCTTCTGAGGAAACCCAGTGTGGTTTCTGCTACAAGGTTATGACAACTAAACAAGCACTTCTACGTCACGCCTCTAAGTGTTACACCAGGCCAGATGCCAAGGATGGCACTATCATAGTTGACGACAATGATAAGAAGGAAAATGTAAAGGAGTTGCGTATTAGTTTAGCGACTATCGTCAACATGTCGACAGCCCTACCGTTCAAGTACTTCATGAATCGGTTCCGCTGTTTTTATTGCTCCAAAGACTTCTCCAAATGCGAGGAGTTAAAAGAGCACACGATAGTGCAGCATCCTGTCTGCGATATGAAATCGCAGTCCATGAGGCTACGGAACCGATATGATGGCGTCAACATCAAGATGGATATCTCCTCCCTTTCCTGTAAGCTTTGTTACGAGACCCTACTAAATTTGAACGATGTCGTAGATCATTTGACGACGGAACATAAAGCTCAATGCAATAAAGCGATTCTCAGCAATTTGCAGGCGTTCAGCTTAATACATGATAACTTCGTTTGCCCGTTTTGTGGGGAGATGTACAGGTATTTTGGGTTACTGCTAAAGCATATAAGCACTAATCACACGGACAATAAATATATTTGCGTTTACTGTGGAGTGTCATTTAGGACAGATCCGAGCTTACGAGCACACGTCAGGCATCGTCACAAGAACGTAGGGCAGTTTAAGTGCAAGAAGTGTGATTTGGCTTTCCCCTCTCCGACCGCTTTGAAGATCCATATGGGTGCGGCTCACGGGAGCAAGGTAGTAAAGTGTTCGGAGTGTTTAGAGAAGTTTATCACTCAGTACTCGATGCAAAGGCATATGCTGACGGTACACGGGAAAGGCCACAAGTGTTCGTACTGCGGGAAGCTCTTCATTAAGTACTCGTTTATGATGAACCATTTGAGGAGGCTGCATTTAAAGGAGAAGAACGTAGAATATGAGTGCGTTCGTGGCACGTATGACTTTTGTGGCTCGGACCGGAGGCGCACAAACTTGGCAATACTGTTCAACCACACCACAATACTCCCATTCAAATGGCGAGGCAAATTTATTTGCTTCTATTGCGGAAACAGCTACTCTGACTATCCGGATTTCAAAAAGCACACCAAATCGCACGGCAGTTGCACTGTCAAAGATTACGCTCTCAAAAAAATCAAAGGCACTGACGTTGAGATTAAAATTGACGTCTCAGAAATCCTTTGCGACGTTTGCAATGAACCGTTTAATCGCTACGAGGAAATAATCGATCATTTGATAGGAAAACACAATTTAGGCTACAACAAATCCTTCGATGTGCCTCTTCAAGAATATCGGCTGGTTGATTTCAAATGCCTCCACTGCGAACAGCAATTCAAGTATTTCGGGGCCTTAATCAGTCACGTTAACAACAGCCATCCACGTAACTCCCTCATCTGCAACGATTGTGGCTGCAGTTTCAACAAAAAAAGAGACTTAGCTTGTCATATCCGTAACTATCATAGACAGGGCGGGTACCCTTGTGAGATGTGCCCGCAGGCTTTCGAATCAAACCATTCTTTGCGAGCACATACTAACAATACCCACTTCCGAAGATGCTCTAAATGTGGCTTGCTCTTCGGGTCTTTGTCTCTTCTACAAAAACATATAGAAGATGAACATCCTTTCCCGACTGAGGGCAACATTAAATGCAGTTACTGTTCCAGAGAATTCCACAGCAATTTAGGGTTAAAGAACCATTTGGCTAAATGCAAAGTAAAATCCGTTGCCCAAGTTGTTTACTACGACGACCCTGAAGCTAAAGACAAGCCTATAAATAACTCAGACTTGCAACAGATCAGGAAAAACATTATCTGCATTCTCAACATGTCCACAGCCGTCCCTTTTAAATACTTCTCTAGGTATTCCTGCTTCTATTGTTCTAGAAAGTTCACGGACTTCGATGAGTTGCGTCAGCACACTAGTTCAGAACACCCATTGTGCGATCTTAAGTCAAAATGCATGAGAAAGTGCAAAGGTCGGCGGATTATCATCAAATTAGACGTTTCCAATTTAACCTGTAAAATATGTAGTCTTCATACCCCAGATTTCGACACCCTCGTCGATCATCTAAACTTAAACCACGACGCTAAATACGATAAGACAGTAAAAAACTGTTTCGAGTGCTTCAAAATCATCAAAGACAACATCCCTTGTCCGTTGTGTCCAGATAAATGCTTTAGATATTTCGTCAGTTTACAACGCCACATGAATTCGGAACACAGTAACAATAACAAGATATGCGATTTTTGCGGCCGCGCGTTCAGAAATGACATCAACTTGAAACTCCACATCAGTTATACACACACGGGGGCCTGCGAATGTGACATTTGCGGCATAAAATTGAACAACAGAGCATGCCTACAGAGACACAAAGCCAAAATCCACGACATAAAAGAGTACAAATGTTCTAAATGCTCCGAATACTTCCAATCGCCGTACCAGAAACAGATCCATCAGATTAAGGCGCACAATATCGGCCACAAGTGCACTTATTGCGATCGAATGTTTACAAGAAACTCGTTCATGATTGACCACGTTCGTAGGACCCATTTGAAAGAGAAAAACGTGCCGTGCTCTCTCTGCAACGATACGTTTTTTGACAATTATCTGCTAAGAAAGCATATGGCGAAGCATGATGGGGAGAGGAAATTCAAATGTACGATTTGCGATAAGGCTTTTCTTAGGAAGACCAATTTGAGGTCGCATATGGATATGCATAAGAAATATGGTCATGAACAGCCAGAGTTTTTGATAGCCGAGTAG
- Protein Sequence
- MHVLPCPVFVDSEFYNRENFFTDSETERTKNSGNYHRRRNLRILFNNTTLIPFKWRRKYVCFFCGEDCYDRDMLVYHTQKHGLCCEKDRPLRLVKAPDSEIKIDVSDINCLICSENFLTFEDIVDHLIQKHNLPYNKDVKLMVTTYRLVDLRCLLCSKQFTFLAKLITHMNTEHPVDCFQCHKCEQKFNKKRDLGSHLRTFHKSCHPCVKCDLSFPTRSALQAHRTTAHLSSCNICFQTFTTDVKRLKHMTRDHSSEETQCGFCYKVMTTKQALLRHASKCYTRPDAKDGTIIVDDNDKKENVKELRISLATIVNMSTALPFKYFMNRFRCFYCSKDFSKCEELKEHTIVQHPVCDMKSQSMRLRNRYDGVNIKMDISSLSCKLCYETLLNLNDVVDHLTTEHKAQCNKAILSNLQAFSLIHDNFVCPFCGEMYRYFGLLLKHISTNHTDNKYICVYCGVSFRTDPSLRAHVRHRHKNVGQFKCKKCDLAFPSPTALKIHMGAAHGSKVVKCSECLEKFITQYSMQRHMLTVHGKGHKCSYCGKLFIKYSFMMNHLRRLHLKEKNVEYECVRGTYDFCGSDRRRTNLAILFNHTTILPFKWRGKFICFYCGNSYSDYPDFKKHTKSHGSCTVKDYALKKIKGTDVEIKIDVSEILCDVCNEPFNRYEEIIDHLIGKHNLGYNKSFDVPLQEYRLVDFKCLHCEQQFKYFGALISHVNNSHPRNSLICNDCGCSFNKKRDLACHIRNYHRQGGYPCEMCPQAFESNHSLRAHTNNTHFRRCSKCGLLFGSLSLLQKHIEDEHPFPTEGNIKCSYCSREFHSNLGLKNHLAKCKVKSVAQVVYYDDPEAKDKPINNSDLQQIRKNIICILNMSTAVPFKYFSRYSCFYCSRKFTDFDELRQHTSSEHPLCDLKSKCMRKCKGRRIIIKLDVSNLTCKICSLHTPDFDTLVDHLNLNHDAKYDKTVKNCFECFKIIKDNIPCPLCPDKCFRYFVSLQRHMNSEHSNNNKICDFCGRAFRNDINLKLHISYTHTGACECDICGIKLNNRACLQRHKAKIHDIKEYKCSKCSEYFQSPYQKQIHQIKAHNIGHKCTYCDRMFTRNSFMIDHVRRTHLKEKNVPCSLCNDTFFDNYLLRKHMAKHDGERKFKCTICDKAFLRKTNLRSHMDMHKKYGHEQPEFLIAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -