Ccur031325.1
Basic Information
- Insect
- Clostera curtula
- Gene Symbol
- -
- Assembly
- GCA_905475355.1
- Location
- FR997806.1:5483489-5519636[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00027 0.028 15.8 2.3 1 23 492 514 492 514 0.98 2 20 0.0048 0.49 11.9 0.6 1 20 520 539 520 542 0.94 3 20 1.1e-05 0.0011 20.3 3.4 1 23 561 583 561 583 0.98 4 20 2.2e-05 0.0023 19.3 3.9 1 23 589 611 589 611 0.99 5 20 4.3e-05 0.0043 18.4 5.3 1 23 617 639 617 639 0.97 6 20 4.4e-06 0.00045 21.5 7.6 1 23 645 667 645 667 0.97 7 20 8.2e-07 8.4e-05 23.8 2.9 1 23 673 695 673 695 0.97 8 20 0.00012 0.012 17.0 6.7 1 23 701 723 701 723 0.97 9 20 2.2e-05 0.0023 19.3 6.4 1 23 729 751 729 751 0.98 10 20 5.6e-07 5.7e-05 24.3 1.9 1 23 757 779 757 779 0.98 11 20 1.1e-05 0.0011 20.2 7.7 1 23 785 807 785 807 0.98 12 20 0.00015 0.015 16.7 6.8 1 23 813 835 813 835 0.97 13 20 5.2e-06 0.00052 21.3 5.2 1 23 841 863 841 863 0.98 14 20 3e-05 0.003 18.9 5.4 1 23 869 891 869 891 0.96 15 20 8.3e-07 8.4e-05 23.8 4.9 1 23 897 919 897 919 0.98 16 20 3.5e-06 0.00036 21.8 6.0 1 23 925 947 925 947 0.98 17 20 2e-05 0.0021 19.4 8.1 1 23 953 975 953 975 0.97 18 20 2.6e-05 0.0027 19.1 6.0 1 23 981 1003 981 1003 0.97 19 20 0.00084 0.085 14.3 0.3 1 23 1010 1032 1010 1032 0.96 20 20 0.26 26 6.5 4.7 1 23 1044 1066 1044 1066 0.99
Sequence Information
- Coding Sequence
- ATGAATCCAGATCACCATAACATGAACACGGGTGGTGGCCAGCCTCCGGGAAGTTCAGAGTCACAGAACCAAAGAGTTCAGACAGCTCAGCAGCAACAAAGCAATTTGCCTCCCACGACGTCTGCGACAGATTTACGAGTGAACTCCTCGGCAGCTGTGAACGTTGCTTTGTCCAGTGTCGCTAAATATTGGGTGTTTACAAACCTATTCCCTGGACCTATACCGCAAGTTTCGGTTTACGGGTTGCCTGCAGGCGCTCGAATTGAAAATGGAAAACCTGTACAGGTATATGTATTTGTAGAACTCAATAACGTGCTATGCCGTCAATGTCGCGCTTCACTGGTAATGACCGAGTGCGGGGTATTGAGCAAGGGGATGGGCGGGCGGCGTATACCCGCTCGCTTCTTCAGACTCCGCTTCGTCAGAGCTCACGCGCGGAAATTATCAAGAAGTCTAGAATTTTGGATATCAAATGTTCAGTTATTACAGGATCTTGGCCAAGCCAGCATATTAAATGGAGATCCAAATATCATACTGGGACACCATGGTGGACAGTCACAAGTCACTGTCTCTGCAGCTCAGCAGATACCTGTCTCGCAGATCATCGCCACACAATCAGGACAAACTCACGATGCACTTGTGGGTCACTCCCAGCAACAGGAGCTCACCCAACAGGCAACAGGTGGCACCGGCCAGGTCACTGTTACCACTGGGCAACCCTCCCACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACAACAGCATAACATTGATATGGGTCATCATTCACAACAGCACATCTTGCAACAGCAACTCATACCACGCCCCGAACACGCTAATCAGCAGATCCAGCTCACCGTAAGTGAAGACGGCATCGTTACTGTGGTGGAGCCTGCTAACACGAAGTTGGTGGACAAGGAAGACTTGCATGATGCAATCAAAATGCCCTCGGATCACACCCTTACCGTTCATCAACTTCAACAAATCGTTGGGCAACAGGTAATAGATAGTGTGGTACGCATAGAGCAAGCTACAGGCGAACCGGCTAATATACTTGTTACCCACAATCCCGACGGTACTACATCCATTGAGGCAAGCGCAGCTGAGTCGCTTATTGTCAAGGACGAGAAAAGTGCTGCCAAGCTGGAGACAGCTCAATTCGCTATACCGACCGATATTAAAGACATTAAGGGATTGGATTTGAAGAGTGTGGGAGCAATGGGAATGGAAGGGGCTGTGGTAAAGATATCGGGCGCTTCGGAACATGACCTCCATGCTATGTATAAAGTGAACGTCGAAGATCTCTCACAGTTGCTCGCTTACCATGAAGTATTCGGGAAACTGAATGCAGAAGGACAACAGCAGCAGCAGCAACAGCAACCTCAAGCTAAGGTGTTAACTGGCATAGAAGTAGAGGTGGAGCCTGGGCCAAGTGCTGGCATGTCTGAAGCGGAATCATCGCCAGGCCACCACACGTGCGACATCTGTGGAAAGATATATCAATTCCGATATCAGCTGATTGTTCACAGGCGTTACCATGGAGAGAGCAAACCATTTACGTGTCAAGTATGCGGCTCGGCCTTCGCGAATCCTGTTGAATTATCGAGGCACGGAAAATGCCACCTGGCCGGAGATCCGAACGAGCGGCATGTGAAGAGAATAGCACAAGAGAAGCCATATGCATGCACCACCTGCCAGAAAACATTTTCCAGAAAAGAGCACTTGGACAACCATGTCAGAAGTCATACTGGAGAGACACCCTACAGATGCGAGTACTGCGCGAAGACGTTCACAAGGAAGGAACACATGGTGAACCACGTGCGAAAACACACAGGCGAGACTCCGCACCGCTGCGACATTTGCAAGAAGAGCTTCACCAGGAAGGAGCATTTCATGAACCATGTTATGTGGCACACGGGTGAAACGCCGCACCATTGTACGGTATGTGGAAAGAAGTTCACTAGGAAGGAGCATTTAGTGAACCATATGCGTTCACACACTAACGACACGCCGTTCCGATGTGAACTGTGCGGCAAGTCCTTCACGAGAAAAGAGCACTTCACCAATCATATACTGTGGCATACGGGTGAAACGCCGCATCGCTGTGACTTCTGCTCGAAGACGTTCACCCGAAAAGAGCACCTGTTGAACCACGTCCGTCAGCACACGGGGGAGTCCCCCCACCGATGTAACTACTGCTCCAAGTCGTTCACGAGACGCGAACATCTCGTCAATCACGTGAGACAGCATACGGGCGAGACGCCCTTCCAGTGCGGATACTGCCCTAAAGCGTTCACGAGAAAGGATCATCTTGTAAACCACGTAAGACAACACACAGGCGAGTCCCCCCATAAATGCTCGTACTGTACAAAGTCGTTCACTCGCAAGGAACACTTGACGAACCATGTCCGCCAACACACTGGCGAGTCCCCACATCGCTGCACTTTCTGCGCCAAGTCCTTTACAAGGAAGGAACACCTCACCAATCACGTCAGACAGCATACGGGTGAAATGCCACACAAGTGCACGTACTGCCCGCGAGCGTTCTCCCGCAAGGAGCACCTCAACAACCACGTGCGGCAACACACCGGCATCACGCCGCACGCCTGTACCTACTGCACCAAGACCTTCACCAGGAAGGAGCATCTTGTCAACCATGTGCGGCAACATACGGGAGAGACGCCGTTCAAATGTTCCTACTGCTCGAAGTCGTTTTCGCGCAAGGAACACCTCACCAACCACATAAACCTGCACACTGGGGACACTCCACACAAGTGTCCGTTCTGTACAAAGACATTCTCCAGAAAGGAACACTTGACCAACCATGTCAGGATACATACTGGCGAGTCGCCACACCGCTGTGATTTCTGTCAGAAAACGTTTACGCGGAAGGAACATTTGACGAATCACATGAAACAGCACACGGGAGACACGGCACATTCCTGCAAGATTTGCTCCAAAAACTTCACGAGGAAAGAGCATCTTGTCACGCATTTGAGATCTCACAGTTGTGGTGAACGGCCGTTCAGCTGCGGCGAGTGTGGCAAATCATTCCCACTTAAAGGAAACCTGCTATTCCATGAACGATCTCACAATAAGGCGAACAATTCTACTGGAAATAAACCTTATCGGTGCGATGTGTGTTCCAAGGAGTTCCTTTGTAAAGGTCACCTAGCGTCGCATCGGCGCACGCACACAGAGGCAGGCGAGGCTCCCGCAGCGAACCCGCCGACTGAAGTGACGGAGGGCGATGCTGCCGCTGTTGCTACTCACACGACCGCCCAGGCCGAGTGGTGCGTCAAGGTGGAATCGGAGCGTGCCGATAGGAAACTTGAAATACGGCAAGCAACAGAGAGCAGACCACCTGAGAATAATGTGGCACAAGACCAGACTAACCCTACTGTGATGCAAATAACTAATCAGCAAGTTCGCGTGACGTCCGGTACGGCTGGCACCTCGACCAACACAGGTATGACGACAGGCACGTTCACGCACACGGTGAACGCCACGCACCACGCTGGCGCCAATATAGCGCACCATACGGTCACGGTCAATTACTAG
- Protein Sequence
- MNPDHHNMNTGGGQPPGSSESQNQRVQTAQQQQSNLPPTTSATDLRVNSSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQVYVFVELNNVLCRQCRASLVMTECGVLSKGMGGRRIPARFFRLRFVRAHARKLSRSLEFWISNVQLLQDLGQASILNGDPNIILGHHGGQSQVTVSAAQQIPVSQIIATQSGQTHDALVGHSQQQELTQQATGGTGQVTVTTGQPSHQQVPNNRVEFVQQHNIDMGHHSQQHILQQQLIPRPEHANQQIQLTVSEDGIVTVVEPANTKLVDKEDLHDAIKMPSDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAAESLIVKDEKSAAKLETAQFAIPTDIKDIKGLDLKSVGAMGMEGAVVKISGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNAEGQQQQQQQQPQAKVLTGIEVEVEPGPSAGMSEAESSPGHHTCDICGKIYQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHVKRIAQEKPYACTTCQKTFSRKEHLDNHVRSHTGETPYRCEYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTVCGKKFTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHVRQHTGEMPHKCTYCPRAFSRKEHLNNHVRQHTGITPHACTYCTKTFTRKEHLVNHVRQHTGETPFKCSYCSKSFSRKEHLTNHINLHTGDTPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHMKQHTGDTAHSCKICSKNFTRKEHLVTHLRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKANNSTGNKPYRCDVCSKEFLCKGHLASHRRTHTEAGEAPAANPPTEVTEGDAAAVATHTTAQAEWCVKVESERADRKLEIRQATESRPPENNVAQDQTNPTVMQITNQQVRVTSGTAGTSTNTGMTTGTFTHTVNATHHAGANIAHHTVTVNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01030446;
- 90% Identity
- -
- 80% Identity
- -