Calb017791.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Clogmia albipunctata
Gene Symbol
stc
Assembly
GCA_001014945.1
Location
JXOV01005929.1:1525-5719[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.6 1.5e+04 -3.8 1.6 15 19 365 369 364 369 0.81
2 14 0.062 5.7e+02 0.7 0.2 4 10 398 404 397 406 0.94
3 14 2.8e-05 0.26 11.4 13.7 4 19 412 427 409 427 0.93
4 14 5.4e-06 0.05 13.7 14.4 1 19 463 481 463 481 0.98
5 14 2.9e-09 2.7e-05 24.1 14.4 1 19 521 539 521 539 0.97
6 14 6.7e-06 0.062 13.4 12.1 4 18 587 601 580 602 0.87
7 14 2 1.8e+04 -4.3 2.0 5 10 631 636 631 636 0.91
8 14 0.53 4.9e+03 -2.3 12.9 1 11 642 652 642 664 0.83
9 14 4.4e-08 0.0004 20.4 16.3 1 18 669 686 669 687 0.97
10 14 1.2 1.1e+04 -3.4 1.0 6 10 716 720 715 721 0.70
11 14 1.8 1.7e+04 -4.0 6.0 10 18 734 743 732 744 0.70
12 14 8.2e-06 0.075 13.1 11.9 1 16 780 795 779 806 0.85
13 14 1.6e-06 0.014 15.4 10.8 1 16 812 826 812 831 0.87
14 14 1.2 1.1e+04 -3.4 0.1 8 12 847 851 846 851 0.75

Sequence Information

Coding Sequence
ATGGCAGAAAGTGGCAACGATTCCAACGCGGCATCATCATCAAATCCCTCGAATTACACCAGTTTCGATCAGTTTATCGCCCAGAACAACTTTAGCCATCTGAATAACGGCTCTTTTAGGCACAACAATCAGTACTATTCTAACGGGTATCAGCAATATTATCCGCAACAGGGAGAGAATTACAATTCCAATTCCTACGTTTTCCCCAAGTCGACCATTGAAAACTCGAATCTCACCCCTTCTGCAACGGAATTCGTGCCCCGGGAGATTAGCAGCCAGGTTTATTACAACAGTAATGAAAATCACTCGAATTCAGAAGGGAGATTTAATGGGAATTATCAGAGTTCAAGGCAGTTTAATGGACAGTATAATGGAACCTcagaaaatcataattatcCCTCAAATTCCTATTCAGAGAACAATCCAAACGTTGAAATACCGTTAGGAAACTTGAATCTGAATGGGAATAACACTCATTCCCAATCGGGAAGACGTAAACCAACTGGAGCGATCCCAAAACAGCCTAAACCTCGTCAAAATTACCGAGAAAATGGAATCCGAACGAATCGGGATTTTGACGGGTTTAGAGGGAGGAATGAGGGCAAGTACCGGTCGAATAGCAACTCAAATCCCAACTATGAAAGACAGCATCGTAATCGAAGAGCAGATTACGATGAGAATAGAGATTATTACGTAGAAAATTCAAAGCAGAAGAACCCTCCGCGGTTCAATAAAAACCACAATAAACCTCACAATAACGATAACAAATCCCTCAAAGAGACCGAAACTCACAACTCCAATAATTCTGATCCTCCAATCAAGAGGAATAACACTAAAAAGTCGAATAATCACCCCGATTTCAAGCCAAATAGGAATTTGAAGAAACACGAACCGTTTATAATGCCCATTGACATTTCTCAGCGGGAAAAACTGGTTGTTGAGATTGATTCTGGAAAACTAGAGTGCTTAGTTTGCTGTGAAAATATCAAACCCTTCCAAAGCACTTGGTGCTGTAAGAACTGTTATCACATTTTGCACTTGAACTGCACAATAAAGTGGGCTCAGAGTTCCAAGTCAGAGGACGGATGGAGGTGTCCAGCGTGTCAGAATGTCTCCGAGGACGTTCCTAGGGACTATTTCTGCTTTTGTGGGAAGTTAAAAAACCCTCAATACAATCGAAATGACGTTGCTCACTCGTGCGGCGAACTGTGCGGTCGTTTTAACGGTTGTGACCACCCCTGTACCCTCCTCTGCCACCCAGGAGCCTGTCCCACATGCCAGGCGACAGTTACAAGAAAATGTGGCTGTGGAAGCACGTCGAAAATGATGCAATGCAATCAGAATGACGAAATAATTTGTGATGGGGTTTGTGAAAAGCTGAGATCCTGTGGCGAGCACAAGTGTAGTGAAAAGTGCCACCCAGACGAGTGTAAAGACTGTCCTGAAACGGTAGAACACAACTGCTATTGTGGAAAGAACAAAAAGGAGGTCGAATGTACGAAAGAGAATCtgtcaaatttgaattatggTTGCGCCAAAAATTGTAACAAGAGGTTAAATTGCGGGAATCATAAATGCCAAAAAACGTGCCACGCCGGGGAATGTGGCGATTGTCGATTAGCGCCGGATTTGATCAAGTCATGTCCCTGTGGGAAAAGGAACATCCTTTTAAGTGAGAGAAAGTCGTGTTTAGATGCGATTCCTTTGTGCGGAAATGTCTGTGGAAAACCTCTAAAATGTGGATCTCCGTCGAATCCTCATCTCTGCATCAGTAAATGTCATACAGGCAGTTGTCCGCCTTGTAACAAGTCCACGGCGGTCAAGTGTAGATGTGGCCACATGGACCAGATGATCAAGTGCAGGCAACTGACCTCAAGAGCGGATGACGCGAGGTGCAAAAAGAAGTGCACGAAAAAGAGGAATTGTGGAAAGCATCGGTGCAATTTGGAGTGTTGCATCGACATCGATCATATCTGTCCCCTTCCATGTCCCTCGACGCTGAGCTGTGGGAAACACAAATGCGATAAAACATGCCACCCAGGACACTGCCTTCCCTGCCTTAGGTCCTCCTTCCAGGAACTGCAGTGCGAGTGCGGAGCTCAAGTGATTTACCCACCAATTCCGTGTGGAACGAAGAAACCGTCCTGCGACAAGCCGTGCCAGAGGCAGCACGTGTGCGACCACGAGGTGTTGCACAACTGCCACACAGCGCCCACTTGTCCGCCGTGCATGATCCAGACGACGAAATGGTGTTTCGGGAAGCACGAGCAGCGGAAGACGATCGTCTGCAGCGATGAGAGCTTCTCCTGCGGGATGCCCTGCAATAAGGAGCTGTCCTGCAAACGGCACAAGTGCATCAAGACATGCCACACGGGTCCGTGCGAGAGTGAGACCGACGTCTGCAAGCAGAGCTGTCCCAAGACCAGAGTCGCGTGCTCCCACAAGTGCAACGCGCCCTGCCACGACGGAGACTGCCCGGACACGCTCTGCAAGGAGGCAGTGGAGGTCATGTGCCAATGCGGTCATCGCAAGCAAACTAGATCTTGTCACGATTTCGCTAATGAATTTAGAAGGATTGCGACAGCAGCTCTAGCCAACTCATTGCAGGTACTATATTGtgttttttgttcattttag
Protein Sequence
MAESGNDSNAASSSNPSNYTSFDQFIAQNNFSHLNNGSFRHNNQYYSNGYQQYYPQQGENYNSNSYVFPKSTIENSNLTPSATEFVPREISSQVYYNSNENHSNSEGRFNGNYQSSRQFNGQYNGTSENHNYPSNSYSENNPNVEIPLGNLNLNGNNTHSQSGRRKPTGAIPKQPKPRQNYRENGIRTNRDFDGFRGRNEGKYRSNSNSNPNYERQHRNRRADYDENRDYYVENSKQKNPPRFNKNHNKPHNNDNKSLKETETHNSNNSDPPIKRNNTKKSNNHPDFKPNRNLKKHEPFIMPIDISQREKLVVEIDSGKLECLVCCENIKPFQSTWCCKNCYHILHLNCTIKWAQSSKSEDGWRCPACQNVSEDVPRDYFCFCGKLKNPQYNRNDVAHSCGELCGRFNGCDHPCTLLCHPGACPTCQATVTRKCGCGSTSKMMQCNQNDEIICDGVCEKLRSCGEHKCSEKCHPDECKDCPETVEHNCYCGKNKKEVECTKENLSNLNYGCAKNCNKRLNCGNHKCQKTCHAGECGDCRLAPDLIKSCPCGKRNILLSERKSCLDAIPLCGNVCGKPLKCGSPSNPHLCISKCHTGSCPPCNKSTAVKCRCGHMDQMIKCRQLTSRADDARCKKKCTKKRNCGKHRCNLECCIDIDHICPLPCPSTLSCGKHKCDKTCHPGHCLPCLRSSFQELQCECGAQVIYPPIPCGTKKPSCDKPCQRQHVCDHEVLHNCHTAPTCPPCMIQTTKWCFGKHEQRKTIVCSDESFSCGMPCNKELSCKRHKCIKTCHTGPCESETDVCKQSCPKTRVACSHKCNAPCHDGDCPDTLCKEAVEVMCQCGHRKQTRSCHDFANEFRRIATAALANSLQVLYCVFCSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-