Calb002241.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- nfxl1
- Assembly
- GCA_001014945.1
- Location
- JXOV01041679.1:13275-16769[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.89 8.2e+03 -3.0 2.0 14 19 157 162 157 162 0.86 2 15 0.43 4e+03 -2.0 0.6 4 10 193 199 193 199 0.93 3 15 1.4e-07 0.0013 18.8 16.0 1 19 207 224 207 224 0.99 4 15 4.5e-05 0.41 10.7 13.4 1 19 260 279 260 279 0.97 5 15 2.5e-06 0.023 14.7 12.9 1 18 314 332 314 333 0.96 6 15 1.3e-07 0.0012 18.8 10.7 1 18 368 385 368 386 0.97 7 15 1.1 9.8e+03 -3.2 0.2 1 4 395 398 395 399 0.87 8 15 0.00011 1 9.5 16.4 3 18 422 437 420 438 0.91 9 15 1.4e-08 0.00013 22.0 12.2 1 18 447 464 447 465 0.94 10 15 0.12 1.1e+03 -0.2 11.2 8 18 510 520 503 521 0.86 11 15 0.0012 11 6.2 6.8 1 12 533 543 533 543 0.90 12 15 3.2e-06 0.03 14.4 6.8 1 11 614 624 614 625 0.96 13 15 2 1.8e+04 -5.3 3.2 5 10 641 646 639 646 0.83 14 15 0.033 3.1e+02 1.6 19.1 4 18 656 670 654 671 0.93 15 15 5.7e-07 0.0053 16.8 12.6 1 17 722 737 722 742 0.86
Sequence Information
- Coding Sequence
- ATGACTGACCAAATCCGTAAAGCTGCAAAAGGCGTAGGTGAACCGAAGCAGAAACAACAAGGAAAAGCCTTAAAAAGCGTTAAGCCGGAAAGGTCATTGCACAAATTTGCAACTCAACAAAGTTGCTCAAGTTCTGAAGAGGAAGAGGATACCGTTGAAACCGGTGCTTTATTTGAGTCAGTGTTCAAGAGCTATAGTGGGGATGCAAAGGATCTTAAGAAAACGCAGCAATTTCTGGAGAACGTTTTTCAGAGCGGAGCGGCAACTTGCTTAATTTGCATAGGAAAGGTGAAGAGAAGTGACCGGATTTGGTCGTGTTCGAACTGTTATTGCTTCTTTCATTTGGCTTGTATCCAGAGATGGGCCAACGACAGTATGGCTCAAAAGAGGATAGGGTGTGGAGAAGAAGGCGGCTACTACACAAACACTGGAGAATATGTCCCAAAACGGAAAATTGTAATCAACTGGGACTGTCCTCAATGTCGATATACGTTCAATGACAATGAAGTACCTCGGGAATACACATGTTTCTGTGGTAAAGAATTTGAACCAACTTTAAATCTATGGTCTATTCCGCACTCCTGTGGCGAAGCTTGTGGATTACCATTAAAGCCTGAATGCGGACACAAGTGTGTTTTATTGTGTCACCCCGGGCCTTGTCCTTCTTGTCCTCAAATTATCTCCAAAAATTGTGAATGTGGACAGTCTGGGCCAAAAACCATTCGTTGTTCTAATAAATCATGGAACTGTGGAAAGAAATGTCCTCAAACCTTATCCTGTGGCATCCATAAGTGTTCTGGTATATGTCACGATCCCAGTTCTTGCAAGCCATGTCCCAAAAAGAGCAGTAAACGATGTCTATGTGGAAAGAAATCCGAAGAGAGGAGTTGTTCAGAGAAAAGTTGGCAATGTGGACAGATTTGTGGCAAAAGCTTTGATTGCGGCTTGCATATTTGTAACCGAGTATGTCATGAAGGGCCGTCTTGTGGTCCGTGCAATCTGGGCTTGCCCAGAAGTTGTCCCTGTGGCAAGCAAACGACAACTGCTAATTGTTCAGAACAAATTGAAAGTTGTGGAGATACCTGTTTGAAAAAGTTGGATTGTGGAATTCACGACTGTCTAAATAGATGCCACAAAGGACCGTGTAGTAAGtgtaTGGAAATTGTAGAGAAGAAATGCCGATGTGGTCTCCATTCCAAAGAAATTCCCTGTTCCAAACCATTCATTTGCGAAACCAAATGTAAGCAACACCGAAACTGTAAGGAGCATCCCTGTAATAGGAAATGTTGCGACGGAAATTGCCCACCTTGTGATCGTATATGCGATAAATTCCTACTCTGCAACAAACACAAGTGTAAATCCCTTTGTCATAGTGGACCATGTTATCCTTGTAATgtcaaatccaatttaaagtgtcgcTGTGGTGGAACTGTGATACAGGTGCCCTGTAGTCatacaaagaaaataaaaccacCGAAATGCCACTTGCCTTGTCGTCGCCCGTCGAAATGCCATCACAAGACTTTGCACACATGTCATGAGAACGAATGTCCTCCATGTGCTAAAGTTTGCGATTTATCAAACGATACAACGAATTGTTCGCATAAATGCCAAGCAAAATGCCATGACTCAGTTATGGTGAAAATTGTGgacaaaaactttaaaccaGTTGGTCCTTGGGATATTCCCGAGGAAGTCATTGAGTTTCAGAAATTGCCGCACCCCAAATGCGAATTGAAAGTGCCTGTCACATGTTTGGGTGGGCATGAAACGATTTTGTGGGCGTGCTATGACTCCAAGTCGAAATGCTGTGGACGGAATTGTGGCCGGAAGCTGAATTGTGGGAATCACGAGTGTCAGAAGTTGTGCCATGTCGTGGCAGATTTGAAAGGATCGGAAGCTGATGAAAAGTCTTGTTCAAAGTGTGAGAAATTTTGTGGTCTGCCCAGACCCAATGGATGTCCTCATGGTTGCAAGAAGCCTTGCCATCCCCCACCATGTGACCCATGCAACCGTCCCGTTAAGAGTGATTGCCACTGTGGATTACTGCAGAAGGTGTATATTTGCTCTGATATTCACAAAAATGAACtagatgaccaaaaaattgctgaattaaaagaagaaatgcTCAGTTGtggaaataaatgtataaaaaatTTGAGTTGCGGCCACCGCTGTCCTGAAAAATGCCATTCAGGCTCTTGTCCCAGTTCCGATGTTTGTAAAAAGAAATCTAAAGTATCCTGCAAGTGCAAGAATCGTAAAATGGAAGTTTTGtgtgagaaaattaaaaatgattttgtattGGATTGTGATGAAAACTGCaaacaaaaaatggaaaaggaACAGCAGTTAGAGGACGAGAggataaaacaattaaaggcAGAAGAAGATGAACGAAACCGTATTGAGTTAGAGGCTTTTCAGGAAAAATACGGTAACAAGAAACCCAAAGAGAGAAAAGTACGACGAGTGGAATCGGAAACCAGTACTAATAAAACGCTTTACTTTATTAGTGCGGCATCTTTATTTGCAATTGCAGCAATTTTAGcgtatttctttttatacaaaaatatgtaa
- Protein Sequence
- MTDQIRKAAKGVGEPKQKQQGKALKSVKPERSLHKFATQQSCSSSEEEEDTVETGALFESVFKSYSGDAKDLKKTQQFLENVFQSGAATCLICIGKVKRSDRIWSCSNCYCFFHLACIQRWANDSMAQKRIGCGEEGGYYTNTGEYVPKRKIVINWDCPQCRYTFNDNEVPREYTCFCGKEFEPTLNLWSIPHSCGEACGLPLKPECGHKCVLLCHPGPCPSCPQIISKNCECGQSGPKTIRCSNKSWNCGKKCPQTLSCGIHKCSGICHDPSSCKPCPKKSSKRCLCGKKSEERSCSEKSWQCGQICGKSFDCGLHICNRVCHEGPSCGPCNLGLPRSCPCGKQTTTANCSEQIESCGDTCLKKLDCGIHDCLNRCHKGPCSKCMEIVEKKCRCGLHSKEIPCSKPFICETKCKQHRNCKEHPCNRKCCDGNCPPCDRICDKFLLCNKHKCKSLCHSGPCYPCNVKSNLKCRCGGTVIQVPCSHTKKIKPPKCHLPCRRPSKCHHKTLHTCHENECPPCAKVCDLSNDTTNCSHKCQAKCHDSVMVKIVDKNFKPVGPWDIPEEVIEFQKLPHPKCELKVPVTCLGGHETILWACYDSKSKCCGRNCGRKLNCGNHECQKLCHVVADLKGSEADEKSCSKCEKFCGLPRPNGCPHGCKKPCHPPPCDPCNRPVKSDCHCGLLQKVYICSDIHKNELDDQKIAELKEEMLSCGNKCIKNLSCGHRCPEKCHSGSCPSSDVCKKKSKVSCKCKNRKMEVLCEKIKNDFVLDCDENCKQKMEKEQQLEDERIKQLKAEEDERNRIELEAFQEKYGNKKPKERKVRRVESETSTNKTLYFISAASLFAIAAILAYFFLYKNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -