Calb013992.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- -
- Assembly
- GCA_001014945.1
- Location
- JXOV01029090.1:1570-7353[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.1 5.7e+02 1.3 0.6 3 22 401 420 399 423 0.87 2 12 0.48 39 5.0 4.9 2 20 676 694 675 696 0.91 3 12 0.00024 0.019 15.4 1.1 1 23 720 743 720 743 0.95 4 12 0.084 6.8 7.4 1.3 1 22 748 769 748 772 0.88 5 12 0.04 3.3 8.4 2.3 2 23 784 806 783 806 0.96 6 12 0.014 1.1 9.9 0.1 2 21 812 831 811 832 0.94 7 12 0.01 0.82 10.3 1.6 2 23 894 914 893 914 0.71 8 12 4e-06 0.00032 21.0 2.4 1 23 920 942 920 942 0.99 9 12 0.14 12 6.7 4.4 1 23 958 982 958 982 0.96 10 12 0.0015 0.12 12.9 1.0 1 23 988 1012 988 1012 0.98 11 12 0.00044 0.036 14.6 1.9 1 23 1017 1039 1017 1039 0.97 12 12 0.00012 0.0099 16.3 1.6 1 21 1045 1065 1045 1070 0.94
Sequence Information
- Coding Sequence
- ATGTTGGCGGATGCTGAGGAGGAATTAGATGACACccatttatgtataaaatgtaGTACAACAGTAATCGGATtagaaaattacataaaacataGAAAATCTCTTTGTTCAACaacgaaattaataaataaaacaatgccATCGTCCCTGTCTACTCCTGCTCCGGCTCCGAGGACGTCTTCTTTTGCCACTTCTGTGACTATTACTTGTGCTGATTCCGCTCCACCAGCCGTTGTCGTCGTTGCCACTCCAACTTTTccaatcataaataataagaattcgCCGAAATTAAAACCATCATCGGATGAGGCTAAAAATCCCATCTCAACGTCACGCCACCATCCAATTATTAAGGAGTCTTCCTATGCCGGAGAACATGGTACTACAGATGACgaggaagaggaggaggacgaCTCCTTTTCCAATACCTCAAAATCGAAATCTTTGGACAAAAGTTTGGAATCCTTTTCATTCAACTACGATCTCATTGAGTCTCCAGTGACCCGATCGGAAGTTGTAACGCCCTCGAATACAATGGTAAATGCCGACTTTCGAAAGCCAAACCATAATCCACCACCTCCGTCCGAGAATTTGATGGACAATTACGATTTGGGAgcagatttatttttcacatcTCTTCAATTGAGTAGTAAAAGGAAATTCCAAAGCTTGACCAGCTCATCGGTGGACAATAAAGAGACAAGACAAGATCTAATCGATGATTGGATTCCGCACCATAGTCCCCATATTGAGAGGCCATCCACCTCGAAAAAGCTAGACACTCCTATTTTCCACATGGATCGACAATTGGCAGACATTTCAGAGGACTCTGATGACGAGAATCTTGTTGACGAAAGCGACTTTGACTTGGACGAAGATGAGGATGACGAGGACGATGAGGAGGAGGATTACCATCGTCCACCTCGAACGCATACCGGAGGAAAGTGGAAGCCTGAACACCGGCCAGAGCCCAATTTAATCACAAACCGGTGGAACGAGACGAAGAATCAGACAACCGCCAATGAGGAGATGATTGGAGATGATTACGTATCCTATTTCACTCCGCCGCAAAATCACACCCAAGGAAAGTGGGTTCCCGGGtcaaaaatcaagaaaatcgACTACAAACCGGTTGAGACGAAGCGCGAAGGTGTTAAGGAGAAGAACAGCAGGCTAGAGGAAGAGAAACTGTGCTTCTGGTGTAATACATGCAATCGGAAATTGGCATCACGTATTATTTACGAGCGCCACTTAAAGTCGAATTTGCACATCAAGCGTTCGCAGCCGGAAAAGGAGCTGGCGGAGGGAACCCTTCCCTCTCCGCGTCTCTTAATGTCAAGCCCCAATCTCGAGGAGAATCGAAAAAATTCCCCGAATTCTAGTCGACGTAGCTCCGCTAATCGGAAGGCCAATGTTCGAAGTGGCGCGGATAATCAAATCTATTCAATAAAAGCCTCGGTATCGGCTGAACAATCTGCTTTGATTAAAGGAGATGCGGAGAATCCAAGGAGAAAATTCACGACGGCCCCAACACCAGCCACAAACACTAATTTAAACGCCGGTGCCGAAGTGAAACcgaaattaaatcaaagaaGGGAGAAGTCGAAGCGCATCAGACGGAAAATCTATATCAGGTGTGAGGTGTGTAAATTGAGGCTTCCCGTCTCGTATATGGGCAAACACCTAATCTCCCACTTTCACTATCGACGCATGCATTTGAACTGGGACAAATCTCGAGCGATGGTTCCCGAGCATTTAGATATGATCATCAAGCAGTCGCCTTATCAGTGCCAACCTTgccaattttatacaatcacACAACAACtgtttttgcaacatttcATCTCGAAAAgccataaaataaacattgaggaaaagaaaattaagacCATGTGGTGCAGCTTCTGTAAATTTGAAAGCTCTACCCAGGAAATGTTAAACCACCTTTTGGGCTCTAACCATAAAGAAGTGGTAATGGCTTTTAATCGATCTGTCCCAATTATCATCAGAGaattggttattttaaaatgtcataATTGTTCCCAAACATTTCGgtacaatattcaaattaaacagcATTTTTGCAAACCAATCAAGGATGAGCCAACATCTTCTAAAACAAACATAAATACTGCTTCAGATAGTTATCAGTCTAGATACACCTGTGAAAAATGTGGACAGATTTACCGTAAAAAGAAAGCGCTTTCCAATCATTTATTCTCAGTCCATCAAATCAAGCAATATTTTTGCACACCTTGCGATCTGACTTTCTTTACCAAAAGCCAAGTTTTAAAGCACAGAAGTTCTgcaaatcataaaataaatgccAACAAAAAACCTAATCTTAAGCAATGCAAACATTGTCTATTTAAATTCCCAAACATCATCGAATTGAAGACTCATCTCAAGAACGTCCATCCAGAAATGGCATTAAAGTGTCTGCGATGTGGTGAAAAGTTTACCGTTGCCCAAGATCTAGGACGCCACACCCGAGACAAGAAATGCCGAGCTCTGAAGTCGGAAGAAACCGCTAAACTTTCCCAACAAGATAATCCGCTCTCTCAAATCCGTAAATGCGTTCAATGTCCTTTCCAGTCCGAATCCGAAGCAGACCTGATTTTCCACAACACTCTCCATAAATTTGAAGGCTCTTCTCCAATTGgttctaaatttaaactgCCTTGCGAAATATGTGGCAAAACCTTTGGAAAGAATTCGCTATTGTGCCATCTGAGGAAACACAAAAATGAACGCATCTTTCAGTGTGGAATGTGCTCCAAGTCATACCCACGGAAGCATAACTTGATTGATCATTTAAAGACTCATGAAAAAGATAAACTTTCATGCGCTAATCCTGCAAAAGAACCACTTTACAAGTGCCAATCAGATCATTGCAAATTTTCCACGAACAATccatcaaaatttaaagaacatcGAGATCAACATGAAGGGAAATTGGTATTTAAATGCAATGTCCAAAATTGCACCTATGAAGGATCTTCttcagttaatttaaaaaaaCACCAAAAAATTCACTCCGTGGAGAATTTTACCTGTCTAAAATGTGGGTTTTCAACCAGGACAATGAGTTATCTGAAGAAGCATTTAATCCTTCATGAGGAggaaaagaattataaatgcCCTCACTGTGAGTTTCAAACGCGTACTTCAGCCAATTTGAGGAAACATATTCTAAGTGCGACGAAACATGAGGGCAAGTTCATGTACAATTGCGATTGTGGCCAATTTCAGACCAACTACGAAAAAGAACTCAAGaagcataaaattgaatgtcagttaaaaaaataa
- Protein Sequence
- MLADAEEELDDTHLCIKCSTTVIGLENYIKHRKSLCSTTKLINKTMPSSLSTPAPAPRTSSFATSVTITCADSAPPAVVVVATPTFPIINNKNSPKLKPSSDEAKNPISTSRHHPIIKESSYAGEHGTTDDEEEEEDDSFSNTSKSKSLDKSLESFSFNYDLIESPVTRSEVVTPSNTMVNADFRKPNHNPPPPSENLMDNYDLGADLFFTSLQLSSKRKFQSLTSSSVDNKETRQDLIDDWIPHHSPHIERPSTSKKLDTPIFHMDRQLADISEDSDDENLVDESDFDLDEDEDDEDDEEEDYHRPPRTHTGGKWKPEHRPEPNLITNRWNETKNQTTANEEMIGDDYVSYFTPPQNHTQGKWVPGSKIKKIDYKPVETKREGVKEKNSRLEEEKLCFWCNTCNRKLASRIIYERHLKSNLHIKRSQPEKELAEGTLPSPRLLMSSPNLEENRKNSPNSSRRSSANRKANVRSGADNQIYSIKASVSAEQSALIKGDAENPRRKFTTAPTPATNTNLNAGAEVKPKLNQRREKSKRIRRKIYIRCEVCKLRLPVSYMGKHLISHFHYRRMHLNWDKSRAMVPEHLDMIIKQSPYQCQPCQFYTITQQLFLQHFISKSHKINIEEKKIKTMWCSFCKFESSTQEMLNHLLGSNHKEVVMAFNRSVPIIIRELVILKCHNCSQTFRYNIQIKQHFCKPIKDEPTSSKTNINTASDSYQSRYTCEKCGQIYRKKKALSNHLFSVHQIKQYFCTPCDLTFFTKSQVLKHRSSANHKINANKKPNLKQCKHCLFKFPNIIELKTHLKNVHPEMALKCLRCGEKFTVAQDLGRHTRDKKCRALKSEETAKLSQQDNPLSQIRKCVQCPFQSESEADLIFHNTLHKFEGSSPIGSKFKLPCEICGKTFGKNSLLCHLRKHKNERIFQCGMCSKSYPRKHNLIDHLKTHEKDKLSCANPAKEPLYKCQSDHCKFSTNNPSKFKEHRDQHEGKLVFKCNVQNCTYEGSSSVNLKKHQKIHSVENFTCLKCGFSTRTMSYLKKHLILHEEEKNYKCPHCEFQTRTSANLRKHILSATKHEGKFMYNCDCGQFQTNYEKELKKHKIECQLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -