Calb010222.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- -
- Assembly
- GCA_001014945.1
- Location
- JXOV01014887.1:17692-21361[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 9.8 8e+02 0.9 0.1 2 17 206 221 205 222 0.84 2 9 0.00093 0.075 13.6 0.3 1 23 263 285 263 285 0.98 3 9 2.4e-05 0.002 18.6 1.9 1 23 293 315 293 315 0.99 4 9 0.0053 0.43 11.2 0.5 1 23 323 345 323 345 0.95 5 9 0.001 0.085 13.4 0.3 3 23 356 377 355 377 0.97 6 9 0.017 1.4 9.6 1.5 2 23 386 407 385 407 0.97 7 9 0.00095 0.078 13.5 5.1 2 23 413 434 412 435 0.95 8 9 1.1e-05 0.00092 19.6 2.6 1 23 441 463 441 463 0.97 9 9 5e-05 0.0041 17.5 3.3 1 23 469 492 469 492 0.96
Sequence Information
- Coding Sequence
- atgaatgaaagTGGTGGATTAAAAGATCAAAATGACGAACACTTGGCTTGTCGGCTTTGTTTGGAACAACACagtaatttaattgcatttcaaaacaatttcaacatttctcagaaaatattatttcatcttCATTTGAAAATAGAGataATTCCCGAAGTCCCTTTAAAACTCTGTGATTCTTGTTTCAAGGCTATTGatgattttaatcattttttctacaaaataaataatatacacaATAGTATTAATACCAAAGAAGATGCATATGAATTTAAGGATCCTCTTGAAAATGAAGAGCATGATGAAAACAATCTTCTAATAGAGATTAGAAACAATTCTCCCCTGAATTTAATAGAAgagaattttatcaataatggCAAGAATAATACTGAACAAATTCCAATTCTTCCATTACCAGATATATTTGCAATGCCGAATAATTTAGATACATCAAATCAGGATCCTATTGAatctataaaattagaaacaaataatttaaataagaatcctgaaaatttaaatgctaAAATACCAAAGATAATATCAGAAGATGGATTATTATGCATCAGAGGaaagaatttattcaaactaaTTCGGAATTTCTACAAATTGAAATGCGAAATATGTATGAAGGAGCTCTCAGATTTAagGTCTCTGAAAGAAATATTCAAGCATTATTCCTCGAAACACAACATTCCTGGTTATTTATCCtgttgcaatttaaaattaacaaaatataatacaattattattcatttggcTCAACATTTGCAGCCAGAGGCATTCCAATGTGATATTTGTGGTCATATTGTGAGTAGACCGGGATCCCTTCCAAGTCATAAGCAAACTCACCTTCCTGAAGACCAGAAACCTTATAAATGCACCGAATGTCCACGACGATTTTGTTGGAAAGGAGCTCTTAAAGTCCATATAAAAACCCATTTACCTGAAAATGAACGGTATTACATTTGCCAAACTTGTGGAAGGACGTACGAAACTCCTGGTGGATTGTCCTTTCATAAGAAGTCACACCTACCCGAGAAGAAACCCAAATCCAATATTTGTCACATCTGTGCAAAGAACTTTGCAACAGGAACTGGGTTAAAAGAACACATTTTAACAATTCATCAACCCAGAGAAAAGGACCAAGTTCAATGTCCGATCTGTAATAAATGGTTAATGCAAAAGAGATGTCTAAAATCTCATATGCTCCTTCACAGTGACGAGTTGTTAAAGTGTAATCAATGTGATTATACAACAAAGAAGAAAGTTCTACTAGAAAGACATCACATAACTCATCACACCCAAGAAACTCCTTTTAAGTGCAGCGAATGTgataagaaattcaaatttaaaagagctCTCAAAGTTCACGAAGAAAAGCACAGAAAAACGAAATCCCACAAATGTGAATTCTGTGGTAGAGTTTTCGCTAATTCCACTAATTTTTATACCCACAGAAAAAATATCCACCCAATTGAGTTAGAGGCTAAGAAAAACCAGGCTCTAGAAGAGAAACGAATGAAAAGGATTGAAGCTGGAATAGAAGTACCCAACAATGtagattatataaattgtaattaa
- Protein Sequence
- MNESGGLKDQNDEHLACRLCLEQHSNLIAFQNNFNISQKILFHLHLKIEIIPEVPLKLCDSCFKAIDDFNHFFYKINNIHNSINTKEDAYEFKDPLENEEHDENNLLIEIRNNSPLNLIEENFINNGKNNTEQIPILPLPDIFAMPNNLDTSNQDPIESIKLETNNLNKNPENLNAKIPKIISEDGLLCIRGKNLFKLIRNFYKLKCEICMKELSDLRSLKEIFKHYSSKHNIPGYLSCCNLKLTKYNTIIIHLAQHLQPEAFQCDICGHIVSRPGSLPSHKQTHLPEDQKPYKCTECPRRFCWKGALKVHIKTHLPENERYYICQTCGRTYETPGGLSFHKKSHLPEKKPKSNICHICAKNFATGTGLKEHILTIHQPREKDQVQCPICNKWLMQKRCLKSHMLLHSDELLKCNQCDYTTKKKVLLERHHITHHTQETPFKCSECDKKFKFKRALKVHEEKHRKTKSHKCEFCGRVFANSTNFYTHRKNIHPIELEAKKNQALEEKRMKRIEAGIEVPNNVDYINCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -