Calb006757.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- -
- Assembly
- GCA_001014945.1
- Location
- JXOV01007967.1:57-5131[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.1 1.7e+02 3.0 0.1 2 23 189 212 188 212 0.87 2 10 0.00044 0.036 14.6 1.4 2 23 220 241 219 241 0.97 3 10 7.1e-06 0.00058 20.2 3.0 1 19 247 265 247 269 0.91 4 10 9.1e-05 0.0074 16.7 1.2 1 23 277 299 277 299 0.97 5 10 0.0002 0.016 15.7 2.3 1 23 307 330 307 330 0.97 6 10 0.0097 0.79 10.3 2.7 1 23 336 359 336 359 0.94 7 10 0.0005 0.04 14.4 0.4 2 23 367 389 366 389 0.96 8 10 8.3e-05 0.0068 16.9 0.7 1 23 395 418 395 418 0.98 9 10 0.00042 0.034 14.7 0.6 1 23 425 447 425 447 0.98 10 10 0.01 0.83 10.3 1.9 1 23 453 476 453 476 0.97
Sequence Information
- Coding Sequence
- ATGAAGCCACTCACACAGGAACAAGATTATATACTTGTAAGTTCTGTCCACTGGAGTTCAATTCTGGTGCCAACAAGTACAAGCACCAAAAGCAGAAACATCCAAAGGAATGGGCAGAGTGGCATAAGGAACGAAATAGTGCTAATCCGAcataattcaattTTGATAACATCAGAGTCCAACTTACCCCAACAAATATGTAAGGAATGCAatgattttatgattattgtGGGACAGTTTAAGGAGAAAGTTTCTCAAAATCAGAATCTTTTAAAAGAAGATTtggaacaaattaaattggaagTAAAAATCGAAGTAATTGAGGACGATTCGACGTTAGAGAATGAAAATCTTGATACTGGTAATACTTCCAGTGATGATGAAAGAGATGAAACAAGAGGTTTCTCCAGTCGTTTGACtagaaaaaaagtaattctAATAGGAAAAAGAAAGCAAAATGAAATTCCACCCACGAAAAAAGAAGAGAAACTTGCAAAAAGGAAGACAATTGAAAGAGTTTCTGTGGAGGAGAGAGACAGGGTAATTAAGGAGTTTATGGCTATTAAATGTGATATTTGTGAGGAAGAGGGATTTGACAAATTTATCGAATTGATAAATCACACAAAAGAAAAACACGGTAAAAGTTTGGTGAAAATTCGTTGTGAAACTTGTAACATTGTCTTCCATCGTCGCAGTTTCCTCTTTGAGCACATAAGTGTCCACCAAAATCCTGATAAATACAAGTGCAATAAATGTGGGAAGACTTTCTCTAGTAAAcgttatttgaaatatcacgACATGGTTCATTGGCCGAAAGATAAAAGAATCTTTCCGTGTGATTCTTGTAATAAATCCTTTGTTAGTAAAAACCGATTGAACATTCATAAGATGAGCCACATTCCACAGAATGAGTTGAGGTACAAGTGTGACCACTGTGAGAAGAGATTCCCTTTCAAGGGTCGAATGCAAACCCACATTTTGGTCTCTCATTCCAACCAGAGGGACTTTTTCTGCGAAGTTTGTGCAAAGTCTTTTGCTTGCAAAACCAATTTGGAGGTCCATATTCAAGCTTGTCACGACAAAAAACAACCCAAGGTGCAGTGTCTTCAATGTGGGAAGTTTCTCACCAACACAAAGTCTTTGAATGCTCACGTCCAACGCGTCCACAAAGAAGCCGGACCTTTTAAATGCGACGACTGCAAATACGTGGCTCCTAACAAATCCGCTTTAATGTCCCATCGGAAGAGAAACCACGCACCAATTCCAAACACATATCCCTGCAAATTCTGTGAAAAGGCGCTAAGGTCCAAACAAACATTACGAGAACACGAAGCCACGCACACTGGAGCAAGACTCTATACCTGCAAATTCTGTCCCCTGGAGTTCAATTCCATTGCAAACAAAAGTAAACATCAAAAGCAAAAACATCCAACGGAATGGGAGGAATGGCATCGTCAGAGGATGGAAGGAATCATTTAA
- Protein Sequence
- MKPLTQEQDYILVSSVHWSSILVPTSTSTKSRNIQRNGQSGIRNEIVLIRHNSILITSESNLPQQICKECNDFMIIVGQFKEKVSQNQNLLKEDLEQIKLEVKIEVIEDDSTLENENLDTGNTSSDDERDETRGFSSRLTRKKVILIGKRKQNEIPPTKKEEKLAKRKTIERVSVEERDRVIKEFMAIKCDICEEEGFDKFIELINHTKEKHGKSLVKIRCETCNIVFHRRSFLFEHISVHQNPDKYKCNKCGKTFSSKRYLKYHDMVHWPKDKRIFPCDSCNKSFVSKNRLNIHKMSHIPQNELRYKCDHCEKRFPFKGRMQTHILVSHSNQRDFFCEVCAKSFACKTNLEVHIQACHDKKQPKVQCLQCGKFLTNTKSLNAHVQRVHKEAGPFKCDDCKYVAPNKSALMSHRKRNHAPIPNTYPCKFCEKALRSKQTLREHEATHTGARLYTCKFCPLEFNSIANKSKHQKQKHPTEWEEWHRQRMEGII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -