Basic Information

Insect: Clogmia albipunctata
Gene Symbol: SCRT1
Assembly: GCA_001014945.1
Location: JXOV01016871.1:13240-26809[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.5e-07 1.2e-05 25.5 1.8 1 23 436 458 436 458 0.99

2 5 0.0006 0.049 14.2 0.3 2 23 468 489 467 489 0.97

3 5 1.3e-05 0.0011 19.4 0.4 1 23 493 515 493 515 0.97

4 5 4.5e-08 3.6e-06 27.1 0.6 3 23 523 543 521 543 0.98

5 5 7.6e-05 0.0062 17.0 1.8 1 21 549 569 549 570 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.5e-07	1.2e-05	25.5	1.8	1	23	436	458	436	458	0.99
2	5	0.0006	0.049	14.2	0.3	2	23	468	489	467	489	0.97
3	5	1.3e-05	0.0011	19.4	0.4	1	23	493	515	493	515	0.97
4	5	4.5e-08	3.6e-06	27.1	0.6	3	23	523	543	521	543	0.98
5	5	7.6e-05	0.0062	17.0	1.8	1	21	549	569	549	570	0.94

Sequence Information

Coding Sequence: ATGATGCCGCGTTGCTTAATGGCGAAGAAATGGAAAGCCTACCCGTGGCCAAATCGTGCCGAAGAAACATTGGGaatcagcagcagcaacagtaGCACCACCACCACAACAACGACGACTACAAACTTTCTAATCTCGACACAACAATCTAACGGCACAACTCTTGCCAACAATTCTGCAACAGCCACCAAGGAGAGCATATCTGAAGTGGTGGGCTCCACCAATACCACGACCCCCTCTTTTCCACCATCCCAAAACGAGGCGGACGACGAAGAGGAAATCGATGTCGTCGGAGATGCGCCGGGTGTTATCGCTGCAACAAATGGCAAGACAACGGTTGTAGTGGCTTCGTGTTGGGGTCCATCTTCGCCAACAGCAGGCGCAACAGCGCCCAGCCCACCACCCAATTCTCCAGAAACAGCAACTCGTGGCTCCACTACTACTCTCTACAATGGATACGGTCACGATTTACCGTCTATGCATTTCACAACGTACCTGCCACGAATTGATCACGAGGTAACTGTCATCACCTCACCAGTTTCTTCTGCTTCTGCTTCTTCTCCCTCTTCATTAACATCGGTATCAAACTCGTCCTCCAGCCTCCAGACTCAACTAGAAGGCACCTCTTCCAAGGAGCTCAGTCCAGAAAAGAGTTCAGATCAAGCACGACGAAACAATATGCCCCCTCTGCATCATCGCAAATCTCTGGCCATGTGTTTCACGAGTACGGGAGCGGCACTGTCTTTGCCACCCAAGAAAAAAGACATCTACAGGCCATATTCCCTCGACGACCGACCACCGTCCCTCTTATCGCAGCGACCTTATGAAATTCGAATTCCGGCCGAGGAAGACCTACACGCAGCACACGCAATTCTGGATCTAAGCACTTCTACAGTGTTTCCTCCTTTACACCATCAACACCATTTGGGTTCCCCTTCAAATGGTCTGTCCAATTCAAATGGACTCACCTCTCTCCATTCTGTTATAACCGCGGACCATGCGACCAACTATCATTCCGCTGACAACAACTCAATTCCTACAATTCTAGTACCTGACAACTTTGTTGACCATAAATCGATCCTCTCCAACAATGACAACGGCAAATCCCAAGAGAACTACTCCTATCTAcagaataaaatcaaaattggggATGATTTGGCGCTAAAAGACGGGAATCCGTTGCTTAAATCACCCTCAGCCAAGACGGTGGCCTATACTTATGAAGCGTTCTTTGTCAGTGACGGCCGGTCTAAGCGAAAGTCCATTGGAGAAATCCCCGTCATCAACACAGACTCGAAGACTAAATACAAGTGCTCGGAATGCGGGAAACAGTATGCAACGTCTAGTAATTTATCGAGACACAAGCAGACGCATCGAAGTTTGGATTCTCAGTCGGCGAAAAAGTGTCACACCTGTGGAAAGGCCTACGTTTCAATGCCAGCTCTCGCGATGCACGTCTTAACACACAAACTATCGCACAGTTGTGGCGTTTGTGGGAAACTTTTCTCCAGACCATGGCTCCTGCAAGGACATTTAAGATCCCACACGGGAGAAAAGCCTTACGGTTGCGCCCATTGTGGAAAGGCCTTTGCCGATCGATCCAATCTCCGCGCCCACATGCAAACCCACTCTAGTGATAAGAACTTTGAATGCTCGAGGTGTCACAAGACGTTCGCCCTAAAATCCTATCTGAACAAGCATCTGGAGTCGGCCTGCTTAAAGGACGAGGGAATGACCAGTGTCTATTCGCCCGATTTTGATCACAATCTCTCTATGGACAGCAGCAATGGAGGTGACCAAAAGTGTATGACGTCCCCTGGGGCTGCAATGGCGCCACTGAAGCCCCCATTAGCTGCCACCACCCTCGCGGTGAACAATACAACGAAGAGCAATTTATCAACGAATAATACGACTAGTTGCAGCAGTAACGATGGCAATAATAACAATGCGCCAACCACCAGCAATGGCAGCCCTGCCTCCCGTTCCATCATCGCCAGCGGCGGTATTATCATCGAGCCTTCGTTCGCTGGGTAA
Protein Sequence: MMPRCLMAKKWKAYPWPNRAEETLGISSSNSSTTTTTTTTTNFLISTQQSNGTTLANNSATATKESISEVVGSTNTTTPSFPPSQNEADDEEEIDVVGDAPGVIAATNGKTTVVVASCWGPSSPTAGATAPSPPPNSPETATRGSTTTLYNGYGHDLPSMHFTTYLPRIDHEVTVITSPVSSASASSPSSLTSVSNSSSSLQTQLEGTSSKELSPEKSSDQARRNNMPPLHHRKSLAMCFTSTGAALSLPPKKKDIYRPYSLDDRPPSLLSQRPYEIRIPAEEDLHAAHAILDLSTSTVFPPLHHQHHLGSPSNGLSNSNGLTSLHSVITADHATNYHSADNNSIPTILVPDNFVDHKSILSNNDNGKSQENYSYLQNKIKIGDDLALKDGNPLLKSPSAKTVAYTYEAFFVSDGRSKRKSIGEIPVINTDSKTKYKCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHVLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSSDKNFECSRCHKTFALKSYLNKHLESACLKDEGMTSVYSPDFDHNLSMDSSNGGDQKCMTSPGAAMAPLKPPLAATTLAVNNTTKSNLSTNNTTSCSSNDGNNNNAPTTSNGSPASRSIIASGGIIIEPSFAG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -