Calb017700.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- -
- Assembly
- GCA_001014945.1
- Location
- JXOV01039781.1:264-3867[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.36 29 5.4 0.6 1 23 575 598 575 598 0.92 2 13 0.032 2.6 8.7 0.5 1 23 686 708 686 708 0.95 3 13 0.0094 0.77 10.4 1.2 2 23 711 732 710 732 0.95 4 13 0.00014 0.011 16.2 2.8 1 23 739 761 739 761 0.98 5 13 1.1 92 3.9 10.3 1 23 766 789 766 789 0.96 6 13 0.096 7.8 7.2 0.7 6 23 804 821 802 821 0.96 7 13 0.0001 0.0082 16.6 2.8 2 23 827 849 826 849 0.96 8 13 0.042 3.4 8.4 0.7 2 23 862 882 861 882 0.87 9 13 7.2e-05 0.0058 17.1 0.5 1 20 888 907 888 910 0.92 10 13 1e-06 8.4e-05 22.9 0.4 1 23 918 940 918 940 0.98 11 13 0.0025 0.2 12.2 4.2 1 23 946 968 946 968 0.98 12 13 1.3e-05 0.001 19.4 4.9 1 23 974 996 974 996 0.98 13 13 0.0015 0.12 12.9 4.3 1 23 1002 1024 1002 1025 0.96
Sequence Information
- Coding Sequence
- gaaaatatagaTGATCCAGAGGAAAACAATGAGGATACCAAAATGAATGTAAACACCGGAAATCAATTGTTCAATGATGAAGACATTTCAATGGAAATGGAATCTGTCCCATCGGAAGaaactttaaaatcaattcctGAACCCGAGGTCCCTACGGGAGGATTAAACACCGCACAGTCAGAACCGAACCACCATAGACCTGGGTTTACGTTGATTAGTAACGTCAAGTTGACTCCAGCCGAGACGAAGAACATTCAGAAATTCATATCCACTCATGTCGTTGAATCGAAACCGATTAACAAGAGCGAAATTTTACCGTGTCCAGTGAAGAATCCACCGACAATCTTGTTACAGGCGAAAGAGGAGGACGTGGAGCCAACAATAGCCGTTGTGACAAGTGTAATCAGAAGGGCTGCTCCCAGGAAAGAAAGAACGCCGTCCCCGGTTTTAGGTGTTATTCAGAGAAATTCGATTTTAGCCGATAAAACGGATCCTATTCCTTCGGAATTGAGTGCTATTGAACCAACTATGGTAAATCAGAACGAAGAACCAAGTCCAATAAATCCGATTCTTAGGAAACCGATACCTATGGGTGGGAATACTAGTGGCAGAAAAGTGatcaaagttaaattaaaaccgtTTAATAAGACTGATTCGGAAGCTTCTAAATCTTGTAATGAGACAAAAACTGTTGAGATTCCAGCAATTAATAATGTCCCGGATTTGGATCGGCCCTCAACATCAAAAGAAGTAAAAATAAGTCCAGAAGATATTGAAATGcagttaatttcaatttttaaagaagaactTATGAAAGAAGAGCTGTTAATATCGAATGAAGAACGTAAAGACGGTAATTTTATCAAAGAGGAGACCCTTTTCAAAGAGGACCCTAAAGAGGAAGACTTTTTAATACCAAAAGAAGAAACTGATAaagaaaagttaaatattataaattcggATTTAGTAACAATTAAAGATGATTCCGTTTTGATAAAGGAAGAGGCTACAGATAAAACTGGGGAAATTGCAATTGATACGGTGGAGATTTATTCTGATTCATCGGTAATTGAGATACCCTACAAAGAAGAGGAGGAAGATAAGGTGAAGAACGTGGAGGACTCAAATATTGCCATTAACGAGATTAGGACTATTGACTGGATTGAAATGAGCGGACCGTCAACCTCAAAACCCACCAGCGTCTTCTATGAAACCTCTGCACAACACCTTTTGGACGATAATGGGAAAATGAGCTTGGAATCGGTGCAACAAATTGATACTATTctagaaaattcaatttcctctGAATCGTGCTACTCTCAAACCAATTACATCTCCTATTCTTCGGGATTATATGGCCCACTCAACGTCAATATCAGAACTGATGAGCAGATGCCCGCCAAAGGGGAAATATCTGAGCAGGAGAGTAACGCCGATCTTGATACGCCATGGAATATTAAACAGGATGTTTTTGAGATAGCAACAACGGCAAACTCACATGACACCAATGCAGCACTTGAGAGCTGGAATTACGGAGGAAATGAAGTTAAAACTGAGAACCTTAACTTCAATTTTCTTAATCAGGgTGCATCAGATAAAGCTGGTCAGTCACTGCCATCGTCTTACGAAAAATCGAAACAATGGGAATCGTCTACGACGTGCACTTATATAAAGGGAAAGATGTATAATGCTGCAAGTCGACCGACAAAGTACGTGAAAAGTTACGCTTGTTTCAGCTGCCCGCGTGTGTTTCGTCTATTTCGATTGCGCAAAGAGCATATGCTAGAGGAGCACAAGGATCTTGTTCGAACGGCAAATTGTGACTCAAAGTCCAAACTATTGCCAGTGACAAATTTGTCCGCCTTGGATATTGAGGTGGATTACCGATCAGATCTGCCAAATGGGTTAACGATTCCAAACTTGGAGGTTCTTCTAAAATATCCGCGAAAACTGAATAGGATGTTGCTGGAATTGAATTTGAAGATCTATTCGGAGAAGCAGGTGGTGTCGGAGGTGACTCAGGATTTGATAATGCAATTTATGACCAGTAGGAGGTACTTTTGTATGGAGTGCGGAGAACAGTTTCCGCTCTTTAATTCGTACAAAAAGCACCTGGCTGAACATTCGATTACATGTTATGCGTGCGACAGGTCGTACAAAAATGCTCTGCGCTTCTCGAGGCATATGCGGCAACATTTGGGAATTTTCGTAAAGTACCCCTGTTCGCAGTGCAGTCGAACGTACTCCTCAAAGAAGAAACTCCAACTCCATAAGATGACCCACTCCACTTTTGGACACAAGTGTAATCATTGTAAGAGGacttttatgcattattcGAGAATGTTGGAGCATAAGCGGCAGAAGCATTTTTCTTCGGGGCAGCCGAAAAAGAAGGAGTACCTTTGTCGATGTGGGGAAGTGTTTCATACCCAGGCCAAGTTTGTATGGCATCAGGAGATTCATGATCGTAAGCCGAAGACGTGTCCCTTTTGTCGGGAGCGGTTTGTTCACAAGAACAGTTTGTCGAGGCATATGCGTCTAGCGCACATGGAGCGTTATTCTGAGGTGAAAAAGGACTCGATTGAATGTCCAGTTTGCCATAAGACGTACATCAAGTCCAGCTACAAACCCCACATGGCCACTCACATCAGTAAGCCGACGTATGAGTGTACGATTTGCAATAAGGTCCTTTCGACCAAATGGAACCTCAAAATGCACCGGTGGACCCACAACAATCGCTCCTCGATGCCGTTCAAGTGCACACTGTGTCCGAAAGCGTTTACCCGCTCCAACGATTTAGAGACCCACCTCCTGATACACAAGTCGATCAAGCCTTACACCTGCGACCACTGCGGATGTCAGTTTGCCTGGAAGTATAACTGGATGCGGCACCAGAGGGAGCACGAGAAGGAGAAGAACCACAAGTGTAACATTTGCCAGAAGGCGTTCCACAGGGCGTATTACCTCAAAGAGCACATTCGATCGCACACGAATGAGCGGCCCTTTGAATGCAGCATATGCGGCAAAACATCGGCCACCAAAACCAACCACAATAAACACCTCAAAATCCACCATGCGCGAGACATTGCCGCAACAGAAGGTTAG
- Protein Sequence
- ENIDDPEENNEDTKMNVNTGNQLFNDEDISMEMESVPSEETLKSIPEPEVPTGGLNTAQSEPNHHRPGFTLISNVKLTPAETKNIQKFISTHVVESKPINKSEILPCPVKNPPTILLQAKEEDVEPTIAVVTSVIRRAAPRKERTPSPVLGVIQRNSILADKTDPIPSELSAIEPTMVNQNEEPSPINPILRKPIPMGGNTSGRKVIKVKLKPFNKTDSEASKSCNETKTVEIPAINNVPDLDRPSTSKEVKISPEDIEMQLISIFKEELMKEELLISNEERKDGNFIKEETLFKEDPKEEDFLIPKEETDKEKLNIINSDLVTIKDDSVLIKEEATDKTGEIAIDTVEIYSDSSVIEIPYKEEEEDKVKNVEDSNIAINEIRTIDWIEMSGPSTSKPTSVFYETSAQHLLDDNGKMSLESVQQIDTILENSISSESCYSQTNYISYSSGLYGPLNVNIRTDEQMPAKGEISEQESNADLDTPWNIKQDVFEIATTANSHDTNAALESWNYGGNEVKTENLNFNFLNQGASDKAGQSLPSSYEKSKQWESSTTCTYIKGKMYNAASRPTKYVKSYACFSCPRVFRLFRLRKEHMLEEHKDLVRTANCDSKSKLLPVTNLSALDIEVDYRSDLPNGLTIPNLEVLLKYPRKLNRMLLELNLKIYSEKQVVSEVTQDLIMQFMTSRRYFCMECGEQFPLFNSYKKHLAEHSITCYACDRSYKNALRFSRHMRQHLGIFVKYPCSQCSRTYSSKKKLQLHKMTHSTFGHKCNHCKRTFMHYSRMLEHKRQKHFSSGQPKKKEYLCRCGEVFHTQAKFVWHQEIHDRKPKTCPFCRERFVHKNSLSRHMRLAHMERYSEVKKDSIECPVCHKTYIKSSYKPHMATHISKPTYECTICNKVLSTKWNLKMHRWTHNNRSSMPFKCTLCPKAFTRSNDLETHLLIHKSIKPYTCDHCGCQFAWKYNWMRHQREHEKEKNHKCNICQKAFHRAYYLKEHIRSHTNERPFECSICGKTSATKTNHNKHLKIHHARDIAATEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -