Basic Information

Insect: Clogmia albipunctata
Gene Symbol: -
Assembly: GCA_001014945.1
Location: JXOV01000874.1:6895-9117[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00013 0.011 16.2 5.4 1 23 325 347 325 347 0.97

2 10 3.4e-07 2.7e-05 24.4 2.6 1 23 353 375 353 375 0.97

3 10 4.2e-05 0.0034 17.8 5.0 1 21 381 401 381 403 0.95

4 10 4.1e-07 3.4e-05 24.1 1.6 1 23 409 432 409 432 0.98

5 10 5.4e-05 0.0044 17.4 3.3 1 23 441 463 441 463 0.99

6 10 0.00024 0.02 15.4 3.2 1 23 469 491 469 491 0.98

7 10 0.0013 0.11 13.1 5.2 2 23 498 520 497 520 0.97

8 10 0.063 5.1 7.8 1.4 2 23 542 564 541 564 0.94

9 10 0.0061 0.5 11.0 0.3 2 23 573 595 573 595 0.93

10 10 0.0036 0.3 11.7 0.7 2 23 602 623 601 623 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00013	0.011	16.2	5.4	1	23	325	347	325	347	0.97
2	10	3.4e-07	2.7e-05	24.4	2.6	1	23	353	375	353	375	0.97
3	10	4.2e-05	0.0034	17.8	5.0	1	21	381	401	381	403	0.95
4	10	4.1e-07	3.4e-05	24.1	1.6	1	23	409	432	409	432	0.98
5	10	5.4e-05	0.0044	17.4	3.3	1	23	441	463	441	463	0.99
6	10	0.00024	0.02	15.4	3.2	1	23	469	491	469	491	0.98
7	10	0.0013	0.11	13.1	5.2	2	23	498	520	497	520	0.97
8	10	0.063	5.1	7.8	1.4	2	23	542	564	541	564	0.94
9	10	0.0061	0.5	11.0	0.3	2	23	573	595	573	595	0.93
10	10	0.0036	0.3	11.7	0.7	2	23	602	623	601	623	0.94

Sequence Information

Coding Sequence: CTCAATCAAAATGACGGATTACCGGCAATATTATGCGCAAAGTGTGTAGCACGTCTAAAAATCGGTTATGAGTTCCAAAGGCAGACGCAAGAGTCGGACGCCTATCTACGGTCGTTCATCTGTAAGGTGAACAATGAGTTCCAAAATGGGGCGAAGAATCCTAGCCAGAGCCAAGCGGTGTTGAGCCTACAACAGCAACAGTCATCTCCTAGCCAACAACAACATAGTTTTAGCCATATAAGTCAGGGTAGGCTGACTACTACTATCCTCCAGCCAGCCACGTCGAGCGGTTTAAGCCACCACCATTTACAACAATCTCAGCTACATCACTCCCATTATTCGTCGTCATCGTCGCGGAGCTCCTCAGTGAAGCACAGCCCGAGCAGTGTCTATCTGCACGACAGCTCCAGTAGTCATCATAGTAACAGCGATGTCGATAACTGTGCCATGGAGGAGGAACTGCTCAGGGAGAACGGGTTCGAAGCGGTGGTCGGCATGGGGGAGCAGTATAAAGATGAAGTGACTAGTCTGAACGGAAGCTCTTTAATTGAGAAGAGCCCCTCACAAATCACCACCACCGAAACCATTAGCAATCATGAGCTGGACTTTGATGACGAAATGGGGGAGGAGGAGCAAGATTTTGAGGATTCAGCGGAAGATGATGACACCACAGATATGCTCGTTGAAGAGCTGATGCTGAACGATAACGCCAAACTGGACTTCCAGAACTTTCCTGATTGCGTGGCTGACACATTGAAGGACGCGGAAAAGGAGTGTGCAGCCACGTCATCCACATCGGTGGTCGGCGGTACCGCGTCCGTGGCCACGTCCCCAACTACTACCACCCCGATGATGGGCGCCACGACAACAACTCGGATGGGGGACCAGGAGATCAAGGTGATCTATATCAATAATGAGGGGAGGCGGGAGAGTAAACTGGACTCTGACCTGACGGCGACGTATCGGTCCAGTTTTCACTGTTTAAAATGTGATAAATACTTTAGTTCATCGACCAACCTGATGAGGCACTCCAAGTCTCACGACGGATCGCGGAACTTCAAGTGTGAACACTGTGGCAAGGGGTTCACGCAGAAGGGCTCCCTCAAGCAGCACTTGTACATACATACGGGTGAGCGGCCGTACAAGTGTGACATCTGCGGGAAGACCTTCACCCAGAGCAAGTCACTGAAGTTCCACATGCGGTGCCATACGGGAGAGAAGCCGTTCGAATGTGAAGTCTGCCAGATGAAGTTCTCGCAGAAAGATAGTCTGAAGCGGCACATCAATACATTCCACAATGTGAACGCCACTCCGGAGGAGTTCAAGTGTGACGTTTGCGGCAAGGTCCTGCACACCAAGTACTCGTTTACGGTCCACCTGAAGAAGCACTCGGCCAAAGAGCGTCACCAGTGCACGGTGTGTAGGAAAGTGCTCAACTCAAAGACCTCCCTGGAGAACCATAGGAAGATGCACGCGGAAGATGTGCCGCTCAAATGCAGACAGTGTAGGCGTGGCTTTATGACGAAGAGTAGTCTCCATCAGCACCAAAAGACGTACCACTCGCCGGAGAACCAGCAATCTCCGACAGAGGTCTCGAGCACGGGCATCGGGGCCTCTGAGCTGCAGTGCTACCGCTGCATGATCGGGTTCGACTCGAAGCGGAACCTGAAGCTACACCTGAAGAACTTCCACCAGGAAGAGGTGCCCGACCTGAATAGTTGCGACATTTGCAACATTTCGTTTGTGCTGCTTCAGGACCTGAAGCAGCACGAGAATCAGTTCCATGACGCAATTGAGGAGACTCAATGCGCCTACTGTGACAGTAAATTTACCTCGCAAAAATTGTTCCAAGAGCATGCTCTAGAGCATAAGTTCCCACCGATGGGGGACCGATACATCCACCACGGTTACGGACAAATCCAATTGTAG
Protein Sequence: LNQNDGLPAILCAKCVARLKIGYEFQRQTQESDAYLRSFICKVNNEFQNGAKNPSQSQAVLSLQQQQSSPSQQQHSFSHISQGRLTTTILQPATSSGLSHHHLQQSQLHHSHYSSSSSRSSSVKHSPSSVYLHDSSSSHHSNSDVDNCAMEEELLRENGFEAVVGMGEQYKDEVTSLNGSSLIEKSPSQITTTETISNHELDFDDEMGEEEQDFEDSAEDDDTTDMLVEELMLNDNAKLDFQNFPDCVADTLKDAEKECAATSSTSVVGGTASVATSPTTTTPMMGATTTTRMGDQEIKVIYINNEGRRESKLDSDLTATYRSSFHCLKCDKYFSSSTNLMRHSKSHDGSRNFKCEHCGKGFTQKGSLKQHLYIHTGERPYKCDICGKTFTQSKSLKFHMRCHTGEKPFECEVCQMKFSQKDSLKRHINTFHNVNATPEEFKCDVCGKVLHTKYSFTVHLKKHSAKERHQCTVCRKVLNSKTSLENHRKMHAEDVPLKCRQCRRGFMTKSSLHQHQKTYHSPENQQSPTEVSSTGIGASELQCYRCMIGFDSKRNLKLHLKNFHQEEVPDLNSCDICNISFVLLQDLKQHENQFHDAIEETQCAYCDSKFTSQKLFQEHALEHKFPPMGDRYIHHGYGQIQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -