Basic Information

Insect: Clogmia albipunctata
Gene Symbol: -
Assembly: GCA_001014945.1
Location: JXOV01024119.1:601-4350[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.4 1.1e+02 3.6 0.1 3 19 196 212 194 214 0.82

2 11 0.0014 0.11 13.0 5.0 2 23 243 264 242 264 0.96

3 11 9.5e-06 0.00077 19.8 4.1 1 23 270 292 270 292 0.99

4 11 1.9e-05 0.0016 18.9 1.9 1 23 299 321 299 321 0.99

5 11 6.4e-05 0.0052 17.2 0.2 1 23 327 349 327 349 0.96

6 11 2.1e-05 0.0017 18.7 0.1 1 23 355 377 355 377 0.98

7 11 4.7e-06 0.00038 20.8 1.6 1 23 383 406 383 406 0.98

8 11 7.1e-05 0.0058 17.1 2.5 1 23 412 435 412 435 0.97

9 11 9.8e-06 0.0008 19.8 0.3 2 23 442 463 441 463 0.97

10 11 1.9e-05 0.0016 18.8 1.9 1 23 469 491 469 491 0.98

11 11 0.0008 0.065 13.8 3.2 1 22 497 518 497 521 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.4	1.1e+02	3.6	0.1	3	19	196	212	194	214	0.82
2	11	0.0014	0.11	13.0	5.0	2	23	243	264	242	264	0.96
3	11	9.5e-06	0.00077	19.8	4.1	1	23	270	292	270	292	0.99
4	11	1.9e-05	0.0016	18.9	1.9	1	23	299	321	299	321	0.99
5	11	6.4e-05	0.0052	17.2	0.2	1	23	327	349	327	349	0.96
6	11	2.1e-05	0.0017	18.7	0.1	1	23	355	377	355	377	0.98
7	11	4.7e-06	0.00038	20.8	1.6	1	23	383	406	383	406	0.98
8	11	7.1e-05	0.0058	17.1	2.5	1	23	412	435	412	435	0.97
9	11	9.8e-06	0.0008	19.8	0.3	2	23	442	463	441	463	0.97
10	11	1.9e-05	0.0016	18.8	1.9	1	23	469	491	469	491	0.98
11	11	0.0008	0.065	13.8	3.2	1	22	497	518	497	521	0.92

Sequence Information

Coding Sequence: ATGTCGTGCTTTGTTTGCGATTGTCCTCACAATGGCACTTTCCAAAATATCGACTCGAAGACTGCCAATACTTTGGTCCGGATGAACAGGACTGAAGCCGAGGAGTTGGAAACAGTTGTCGGAAATGCTATTTGTCCGGATTGCCTGGAACTGTGCGAAGAGTATGAGGCTCTGCAGAATAAAATGTCTGCCATTGCGAATAAATTGAACAGAAACAACAAAACTGTAGAAATAATTCCGGAAAACCCCGAAGAAGAAGACGAGGAGGTGGAGGAACAATTACTGGACAGTAGTCTGGACCCAGAAATAGATGTGAATGTTCTCGTTGAGGACGAAGACGAGCTAAAATTTTCCTTACTGATTGAAAATGAAGAATTTGAAGAAGTGGAACATATTGAAGAAATCCTTGAGGATCATGAGTTGGAAACACCTTCATCGGAAAGAAATCTGaaCGACAtttatgctttaaagaacaaaATGTTTATCTGCTTATTATGCTCGTCTGAAAACTCTGCTGATGTGGAATTAAATTCGGCTGACTTCTCGAAACATATGCAATTGGAACATGATATGAAGTTGCTGTTCTGCGACGAATGTGGGGTGGTTTTCCTTGAAATTCACGAACTTCAACAACACAAATtgGACAAATGCGGAAAAAGAAAGCATGAATCCGAATCGAAGACAGAGCTACTGCCAACCGCGAAACGGATTGATTTGAATTCGTGGCAGTGTTTGTTGTGCAAAAAGTTCTTTTCAACTCGAAAGTTGCTGGACCATCACATGCACATTCATATGGGGCAGCAGCCTTACAAGTGTCCGCATTGTGACAAGCTCTTTGCCAACAAGTACACATACAGTAGTCATTTGAAGACGCACGACGAACGGCCTCGTCCTTTCCAATGCGACGAGTGCGACAAGACGTTTTTGACGGTTCAGAACTTGCGGCAACATAAGAGGACGCACTACGCAgtcaaaatgtttatttgtgATATTTGCGAGAAGGGGTTTAATAGTGAAAAGAATTTGAGTGTTCATAAAATTGTGCATTCGAAGCATAAACCTTTTATGTGCCGGGTCTGTGGTAAGGCTTTCGCGCGCAGGGGAGAGGTCAAAGACCACGAGAGAATTCACACGGGAGAAAGACCTTTTACATGCGATATTTGTCAAGCTACTTTTACTCAACAAAGTAATATGTTGAGTCATAAAAGAACGACTCATTTGAATGATAAAAGGCACAAGTGCGATCAGTGCGGGAAGGGGTTCAAAAGGCGCAGACTACTCGACTACCACGTTAAATCTATTCACACTGGGGAAAGACCTTTAAAATGTCCAGAATGTCCCTCGGCTTTCGTTTATCCCGAGCATTTGAAAAAACACTTGCAAATCCACCAAAATACTAAACAGTTCAGTTGCGAAGTGTGCAACAAGTCTTTTAATAGTAGAGACAATCGGAATGCGCATCGTTACACCCATAGCGAAAAAAAACCATATGAATGTCGCACGTGTGGTCAAGGTTTTATGCGAAAACACCAACTCTATACCCATATAAAACAGAAACAACACAATAGCGGCACAATCATTATAAATAAGCCGCAAATTTGTGAGATCAAATTGAAACGGGCGGCAATTGAAACCGTGGGAAAACCTGGAGCGAAAAGTGTAGCAATAGAATCGGACGACTCAATTGCTGTGGATTGGAGTAAACATTTGAAAGGAAAAGCTGCTACCTATTTTCTCGAAGAAGATGAGGACGATCCCGAATGTATTGAAGATGTAGAAGAAATGAATCCAATTGGAGTGGAAAATGAGATTTATATTATGGATGAAAATGAAGATGAAGTACAAAATCATCTCGATACAATTCTTTCCCATAATGAAGATTAG
Protein Sequence: MSCFVCDCPHNGTFQNIDSKTANTLVRMNRTEAEELETVVGNAICPDCLELCEEYEALQNKMSAIANKLNRNNKTVEIIPENPEEEDEEVEEQLLDSSLDPEIDVNVLVEDEDELKFSLLIENEEFEEVEHIEEILEDHELETPSSERNLNDIYALKNKMFICLLCSSENSADVELNSADFSKHMQLEHDMKLLFCDECGVVFLEIHELQQHKLDKCGKRKHESESKTELLPTAKRIDLNSWQCLLCKKFFSTRKLLDHHMHIHMGQQPYKCPHCDKLFANKYTYSSHLKTHDERPRPFQCDECDKTFLTVQNLRQHKRTHYAVKMFICDICEKGFNSEKNLSVHKIVHSKHKPFMCRVCGKAFARRGEVKDHERIHTGERPFTCDICQATFTQQSNMLSHKRTTHLNDKRHKCDQCGKGFKRRRLLDYHVKSIHTGERPLKCPECPSAFVYPEHLKKHLQIHQNTKQFSCEVCNKSFNSRDNRNAHRYTHSEKKPYECRTCGQGFMRKHQLYTHIKQKQHNSGTIIINKPQICEIKLKRAAIETVGKPGAKSVAIESDDSIAVDWSKHLKGKAATYFLEEDEDDPECIEDVEEMNPIGVENEIYIMDENEDEVQNHLDTILSHNED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -