Calb005179.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Clogmia albipunctata
Gene Symbol
-
Assembly
GCA_001014945.1
Location
JXOV01010997.1:6086-10424[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00042 0.034 14.6 4.2 1 23 163 185 163 185 0.97
2 11 5e-05 0.0041 17.5 4.2 1 23 191 213 191 213 0.98
3 11 0.00014 0.012 16.1 4.4 1 23 219 242 219 242 0.96
4 11 3e-05 0.0024 18.3 1.7 1 23 248 270 248 270 0.98
5 11 0.00014 0.012 16.1 2.1 1 23 276 298 276 298 0.99
6 11 1.4e-05 0.0011 19.3 0.3 1 23 304 326 304 326 0.98
7 11 7.9e-05 0.0064 16.9 1.5 1 23 334 357 334 357 0.98
8 11 0.00062 0.051 14.1 1.0 2 23 364 385 363 385 0.97
9 11 0.00012 0.0097 16.4 0.5 1 23 391 413 391 413 0.99
10 11 6.4e-06 0.00052 20.4 3.2 1 23 419 442 419 442 0.93
11 11 8.7e-06 0.0007 19.9 5.2 1 23 456 478 456 478 0.97

Sequence Information

Coding Sequence
ATGGCTTCGGTTTTCCTGCACAATACAGCGAAAAAGGGCACGGGTGGCGCAGCTGCTGCGTCTGGCTCGAAAGCTGCAGCGGGGAAGAAGACGACGGTGGGACGGAAGAAGGTCGAAATTATCCAGCAAATCGAGGAGGACGAAGTTGACCAGGTGGAAGACGACGAGGAGGAAGAAGAGGGAACGTATTTCGTAGATCAGACGGGCAATTACTATTACCAGGCCAACAAAAACTCGGAGCCCGTCCTAACTAGTCCACCACCAGGTCTAGTTGAATCGAATACCAAAGAGGCAGAAGACGTAAATTATGTGGTGATTTTGGACGAAAACGCAGCCCAAGACAATGCAGAAGATGACGATAATGTGTACGATTTTGACGAGGGAATGGTTAAGCAGGAGCAAAACATGGATATTGAACTGGTTCCCGCGAATCCATCATCGGATAGGAAATCCAATCAACATTCAGTCAATTATTCCTTAGGTTCTCATGTCTGTAATTACTGCGAGTACACGACCACGAAGCGCTATTTGCTGTCGAGACACTTGAAAAGTCACTCCGTGGACAGGCCTCACAAGTGCTCTGTCTGTGAGCGAGGCTTCAAGACTCTGTCCAGCCTCCACAATCACGTAAACACACACACTGGCACCAAGCCTCATCCTTGCCGACATTGTAGCAGCACTTTTACTACCAGTGGAGAACTTGTAAGACATATGAGGTACAAGCATACTCACGAGAAGCCGCACAAATGCACCGAGTGTGACTACTCGAGTGTGGAACTGAGCAAGCTGCGGCGTCACATTCGCGTCCACACTGGAGAGCGTCCATTCCAGTGCCCCCATTGTACTTACGCGTCCCCGGACACGTTCAAACTAAAGCGCCATCTGCGGATTCATACGGGAGAAAAGCCGTACGTTTGCGACGTGTGCAACGCCCGCTTCACACAGTCCAATTCGCTGAAGGCGCACAAGCTGATCCACAACGTGGGCGACAAGCCTGTGTTCCAATGTGAGCTCTGTCCGACGACTTGTGGACGCAAAACCGATCTCCGGATCCACATCCAGAAACTGCATACGGCGGATAAGCCTCTGGTCTGCAAGCGGTGCAACAACACTTTCCCGGACCGGTACAGCTACAAGATCCACGCGAAGACGCACGAGGGCGAAAAGTGCTACAAGTGCGAATTCTGTCCCTACGCGTCGATCAGTGCGCGTCACCTGGAGACGCACATGCTGATCCACACCGACCAGAAGCCATTCCTGTGCGAGCATTGTGATCAGTCCTTCCGCCAGAAGCAGCTGCTCAAGCGCCACATAAACCTCTACCACAATCCGAACTACGTGGCGCCCCCTCCCAAAGAGAAGACCCACCAATGCTCGAGCTGCCACCGCGCATTCAGGCACAAGGGGAATCTGATTCGGCATATGGCGATCCATGACCCGGACATGGGGGCCAAGGACCAGGCGATGGCTCTCAAAATAGGCCGTCGAACGAGAATTGTGCCAGTCGGAGATGACAGCAATGGCGAGGTTGATTTCATAGAAGAGGacgaagaagaggaggaggaggaagaagagGAGGGAGAAGGAACTGATATGGAAGAGGGCAATAACCAGTACGTGGTATTGGAAGTGATCCAGGTGCCCGAAGATGAGGATGAGGGACCAAAAATGGAAGAGAACCTAGAAGAAGaaGCCGATGATGATGGAATTACACTCTTGCCTGCTAAGAACAaagagaattttcaaatagacaTTAAAAAAGAGAAACTGAACAACTTTGGTTTTGATGTGGATATGTAA
Protein Sequence
MASVFLHNTAKKGTGGAAAASGSKAAAGKKTTVGRKKVEIIQQIEEDEVDQVEDDEEEEEGTYFVDQTGNYYYQANKNSEPVLTSPPPGLVESNTKEAEDVNYVVILDENAAQDNAEDDDNVYDFDEGMVKQEQNMDIELVPANPSSDRKSNQHSVNYSLGSHVCNYCEYTTTKRYLLSRHLKSHSVDRPHKCSVCERGFKTLSSLHNHVNTHTGTKPHPCRHCSSTFTTSGELVRHMRYKHTHEKPHKCTECDYSSVELSKLRRHIRVHTGERPFQCPHCTYASPDTFKLKRHLRIHTGEKPYVCDVCNARFTQSNSLKAHKLIHNVGDKPVFQCELCPTTCGRKTDLRIHIQKLHTADKPLVCKRCNNTFPDRYSYKIHAKTHEGEKCYKCEFCPYASISARHLETHMLIHTDQKPFLCEHCDQSFRQKQLLKRHINLYHNPNYVAPPPKEKTHQCSSCHRAFRHKGNLIRHMAIHDPDMGAKDQAMALKIGRRTRIVPVGDDSNGEVDFIEEDEEEEEEEEEEGEGTDMEEGNNQYVVLEVIQVPEDEDEGPKMEENLEEEADDDGITLLPAKNKENFQIDIKKEKLNNFGFDVDM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-