Basic Information

Insect: Clogmia albipunctata
Gene Symbol: -
Assembly: GCA_001014945.1
Location: JXOV01040797.1:4172-9164[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.4e-07 1.1e-05 25.6 0.4 1 23 201 223 201 223 0.98

2 9 1.4e-06 0.00011 22.4 1.4 1 23 232 254 232 254 0.97

3 9 0.003 0.24 12.0 0.2 3 23 418 437 417 437 0.97

4 9 0.00015 0.012 16.1 6.0 3 23 445 465 443 465 0.96

5 9 1.4e-07 1.2e-05 25.6 0.4 1 23 474 496 474 496 0.98

6 9 0.00032 0.026 15.0 0.1 1 23 502 524 502 524 0.98

7 9 5.2e-06 0.00042 20.6 0.9 1 23 530 552 530 552 0.99

8 9 7.6e-05 0.0062 17.0 4.9 1 23 558 580 558 580 0.99

9 9 1.8e-05 0.0015 18.9 3.4 1 23 586 609 586 609 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.4e-07	1.1e-05	25.6	0.4	1	23	201	223	201	223	0.98
2	9	1.4e-06	0.00011	22.4	1.4	1	23	232	254	232	254	0.97
3	9	0.003	0.24	12.0	0.2	3	23	418	437	417	437	0.97
4	9	0.00015	0.012	16.1	6.0	3	23	445	465	443	465	0.96
5	9	1.4e-07	1.2e-05	25.6	0.4	1	23	474	496	474	496	0.98
6	9	0.00032	0.026	15.0	0.1	1	23	502	524	502	524	0.98
7	9	5.2e-06	0.00042	20.6	0.9	1	23	530	552	530	552	0.99
8	9	7.6e-05	0.0062	17.0	4.9	1	23	558	580	558	580	0.99
9	9	1.8e-05	0.0015	18.9	3.4	1	23	586	609	586	609	0.96

Sequence Information

Coding Sequence: atgaatttacgGAAGAGACAGCTGACTTTGGGTCAGAAGGTTTTCGTGGTGCAAAACTATTATCGACTCAACGAGGATATGAGTCAGGTGCGAGTGGAATTCCACAAGAACTTTGAGGTGAAAACACCGCGGTCAGTGTTGAAGATTTTCGGACAATTAGTGGACACTTTTGAGAATTCCGGATCCGTGGCTCAGCCAGTTTATTTCGAACCGGCGGCGGATTTGGACGATGAAGAGGGTGGCAAAAAGGTTCcgaaactaaaaataaaacttagtGAATCCCCGCCACAGCTGGATAAGGAgtatcatataaatttggatGAGATGCAATGGGAAGATCAGGGATTTCTGGACCTGGAGCCAATTTTCGACGAACAACTGATGGAAACTATTGAACGGGAAATGGAACAAGACTGGGTGGCCATTGACTTTGGCCCTGAGTCTCTTACACAGATCCTAACCAACTTACCTGAACTCGCCTCCGATCCGGAAGAAAACGGCACCATGAGCAGCGTCTCCGAAAGTGAAAACGACTTTGACTTGGACGAAGTGGTCACTAGTCCAAACAAAACCGACGACACTGAGGAGGATAGTAGTGACTTTGAGTGTGCAATTTGTGGAAAAAACTTTGAAGTGAAAAGTTACTTGGTGCGACACATGAAAACACACAAAATCGACGATGATGACTTTTTGCACAGTTGCCAAATCTGTGGGCGGGGTTTCAAATCCGCGACCAACCTCAAAGTTCACACTTTGACCCATATTCCAATTGCTGAACGGCCAAAGATGGATTTTGAAAGAAAGGAGCTCACATTGGGCCAGAAGGTGTTCCTTCTAAAGAACTATTACCGAAGTGCTGAAAACCTCATTGTTGCTCGCAGTGAATTTCAATCGACGTTTGAAATTGAAACGAACGAAGGAATGCTGAAGATAATCCAGAAATTGGTGGAGAGATTCGAGGCAACTGGAACTGTCCAGTTCACAATATTCTTTGAGTCCAAGGAAGTGCCTCAGGAGGCAATAACTATACCAGATTCAGATAAATTGGAGGAACCAGGAGATTCCCCACTTCTTGAACAACAGGAATgtgagaatttaaaaatttgtagttCAGTAAATCAAAATGTGGCTGAGGAAGAGGTATTGGACGAAGAAGTCGTTCCAGAGCTGTTTACAATTATGGAAGTGccagaaaagaaaaaagatatcattttgaaaatgcCGCGAAAATTTGAGAATAGCGCTGTACTTTGTGGAATTTGCGACAAAAGCGTGTCCCGTGCTGCTCTATCCAAACATATGAAATTGCATGGATCTTCACAGCCTCACTTATGTGACATTTGTAACAAATCTTTTAAATCGCACAATTCACTAAAGGAACACAAACAGACCCACATTCCGATCGAATTAAGGAGGAAATTCGAGTGCCCGACGTGTGGCAAGAAGGCGGTGAACAACAGTAATTTGAAGAAACACATGCAGATTCATACAGGCCTGAAGAACTACGTTTGTGAGTGGTGTGGAAAAGAGTTTTTGAAGGAAATCGCCTTAACACGACACGTCCGAATTCACACCGGAGAACGTCCGTATCAGTGCTCTGTCTGCAAGAAAGACTTTAACGCCCAAAGTGCTTTCACGGTCCACCTCCGCACGCACACCGGAGAGAGACCCTACAAATGCAACTATTGTGATAAATGCTTCATCGACAGCGGATCTAGGTCTATTCACCATCGTGTTCACACCGGCGAAAATCCCTACGTCTGCCACTTGTGTGGGAAAACCTCCAAGCAAGCACAGAATCTCAAAAGCCACCTCAAACATGCCCACAAAATATCCAAACCCACATTAACTGCTGGAAAAAATTCCGTTAATCCaccttttttataa
Protein Sequence: MNLRKRQLTLGQKVFVVQNYYRLNEDMSQVRVEFHKNFEVKTPRSVLKIFGQLVDTFENSGSVAQPVYFEPAADLDDEEGGKKVPKLKIKLSESPPQLDKEYHINLDEMQWEDQGFLDLEPIFDEQLMETIEREMEQDWVAIDFGPESLTQILTNLPELASDPEENGTMSSVSESENDFDLDEVVTSPNKTDDTEEDSSDFECAICGKNFEVKSYLVRHMKTHKIDDDDFLHSCQICGRGFKSATNLKVHTLTHIPIAERPKMDFERKELTLGQKVFLLKNYYRSAENLIVARSEFQSTFEIETNEGMLKIIQKLVERFEATGTVQFTIFFESKEVPQEAITIPDSDKLEEPGDSPLLEQQECENLKICSSVNQNVAEEEVLDEEVVPELFTIMEVPEKKKDIILKMPRKFENSAVLCGICDKSVSRAALSKHMKLHGSSQPHLCDICNKSFKSHNSLKEHKQTHIPIELRRKFECPTCGKKAVNNSNLKKHMQIHTGLKNYVCEWCGKEFLKEIALTRHVRIHTGERPYQCSVCKKDFNAQSAFTVHLRTHTGERPYKCNYCDKCFIDSGSRSIHHRVHTGENPYVCHLCGKTSKQAQNLKSHLKHAHKISKPTLTAGKNSVNPPFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -