Calb009528.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- -
- Assembly
- GCA_001014945.1
- Location
- JXOV01016343.1:12928-14916[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0006 0.049 14.2 1.2 2 23 83 103 82 103 0.97 2 14 0.00023 0.019 15.5 0.5 2 23 109 130 108 130 0.93 3 14 4.5e-05 0.0037 17.7 4.3 1 23 136 158 136 158 0.97 4 14 1.5e-05 0.0012 19.2 3.7 1 23 164 186 164 186 0.98 5 14 0.0026 0.21 12.1 0.2 3 23 194 215 193 215 0.97 6 14 0.00078 0.064 13.8 0.8 3 23 259 279 257 279 0.97 7 14 2.9e-05 0.0023 18.3 0.5 2 23 284 305 283 305 0.97 8 14 4.3e-06 0.00035 20.9 1.4 2 23 312 333 311 333 0.96 9 14 6e-05 0.0049 17.3 3.0 1 19 339 357 339 357 0.99 10 14 0.002 0.16 12.5 1.5 1 23 401 423 401 423 0.98 11 14 1.4e-05 0.0012 19.3 2.1 1 23 429 451 429 451 0.99 12 14 0.031 2.5 8.8 5.1 1 23 456 478 456 478 0.95 13 14 1.4e-06 0.00012 22.4 3.8 1 23 484 506 484 506 0.99 14 14 0.00023 0.018 15.5 5.3 1 23 512 534 512 534 0.98
Sequence Information
- Coding Sequence
- aTGGACGTAATTGTGACTGACGAATTGGATAAAATAGATCCTCTTCAAATGGAGACTAGAGATCCGGGATTTTTAACAGTATTCATCCAATCGGAGGTAAACCACAACTTTGAACCGGAATTGGAAGTAAAACGAGAGCCAGAAGAGAGTGAATCTGAGGAAGACCCACCAAGTATTGACGAGGATCTCGACCAAAGTGATAGCGACTTCAGTGAATCGGAaggaaaagatttaaaatcgaaaactCAATGCAAAGAATGTGGAAAAATAGTTCGATCATTTACATTTGCAAGGCATATGAAATCACACGAGCCAAAGCGAACAAAGTGCTTGTTTTGTGGGAAGATCTTTGGAAATATCTACAACTTAAAGCGCCACGAATCGGGTCACGAGGGAGTGAAAATGTTCAAATGTGATcagtgttttaaaagtttccgAGCAAAGGACTCTTTGATCAAACACATGACACACCATACGGGTATTAGGCCTTTCAAATGTCACCTCTGCGAGAGAACTTTCTCGGCCAAAGACTATTTGACCAGGCATTTAAAAGATCACAGTGGCGAAAATGTGAAAGCTTGCGAATTTTGCGGTGAAGTTATTACTAAAATTGCCAATTTCCAGTATCATATGAGAAAATATCATTTAGAAgagataaataacaaaaagaaaaattccaATAGTCAAGTTAATAATGATTCAGTTGTAAagtattcattaaatttaaaagaaggaACAACAAGTGAAGTTTCAGCGGAAGATAACTTTATAGATTGCAATCAATGTTGTAAAACATTTGCTAGTGAAGACTTTTTAGCGGCTCATATGATGACTCATACAAAGGATATTAAATGCGAGAACTGTGATTTGGCGTTTGCTAGTTATTCTCGATTAAATCGTCATTTGAAGAGTCACATTGGTATAAAGATGTGCAAATGTGACGAATGTGGAAAGGGTTTTTCAACAAGAAATAGCCTAGAAGTTCACAAACTAATTCACACAGGAGAAAAGAACTTTCAGTGCTACAAATGTGGAAagttttttcgaaataaaacgGGTTTAAAGAGGCATTGCCTCAATTGTAAATATGACAATGATGATAATAATCATGGTGAAGAATCGTCAAATGAAGGTGATCAATCTAGTAGTATAATTCTTCAAAAGAAAAGGAGAAGAAGTAAAAAAGATGAGAAATCAAACCATAAATGTAGAATATGTGAAATGTTGTTCTTCAGAGAAGATAATCTAATCACTCACGAAAAGGTTCATGAAAATGAAGTCCCTTACAAATGTGCAGAGTGCAATGAAGTTTTTGAGAGGCTCGGCTACTATCATAAGCACATGAAAATGCATCCAGAGTGCAATTTCAAGTGTAGCCGTTGCCCGAAATCCTttacaactatttttaaataccaatGCCACATTCTGTCCCATGGAAGCGATAAACCGTTCGAATGTCAACTATGTAATAAAACCTTTTCAGAGAAATTCACCATGAAGAGACACATGAGGACGCATAGCGGTGAAAGACCATTCCATTGTGATATTTGTAAGAAGTCGTTTaatcaaaaacacattttaaaggCACACcagaaaatccatttaaagtaa
- Protein Sequence
- MDVIVTDELDKIDPLQMETRDPGFLTVFIQSEVNHNFEPELEVKREPEESESEEDPPSIDEDLDQSDSDFSESEGKDLKSKTQCKECGKIVRSFTFARHMKSHEPKRTKCLFCGKIFGNIYNLKRHESGHEGVKMFKCDQCFKSFRAKDSLIKHMTHHTGIRPFKCHLCERTFSAKDYLTRHLKDHSGENVKACEFCGEVITKIANFQYHMRKYHLEEINNKKKNSNSQVNNDSVVKYSLNLKEGTTSEVSAEDNFIDCNQCCKTFASEDFLAAHMMTHTKDIKCENCDLAFASYSRLNRHLKSHIGIKMCKCDECGKGFSTRNSLEVHKLIHTGEKNFQCYKCGKFFRNKTGLKRHCLNCKYDNDDNNHGEESSNEGDQSSSIILQKKRRRSKKDEKSNHKCRICEMLFFREDNLITHEKVHENEVPYKCAECNEVFERLGYYHKHMKMHPECNFKCSRCPKSFTTIFKYQCHILSHGSDKPFECQLCNKTFSEKFTMKRHMRTHSGERPFHCDICKKSFNQKHILKAHQKIHLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -