Calb015006.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- -
- Assembly
- GCA_001014945.1
- Location
- JXOV01033184.1:5796-9038[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.2e-05 0.00096 19.5 1.3 1 23 139 162 139 162 0.97 2 22 0.045 3.7 8.3 0.3 3 23 170 190 168 190 0.96 3 22 0.38 31 5.4 0.2 1 23 198 221 198 221 0.95 4 22 0.0095 0.78 10.4 0.5 2 23 261 283 260 283 0.95 5 22 7.4 6e+02 1.3 0.2 1 23 303 325 303 325 0.89 6 22 1.6e-06 0.00013 22.3 1.5 1 23 330 352 330 352 0.98 7 22 5.8e-06 0.00047 20.5 0.6 1 23 358 380 358 380 0.97 8 22 0.00049 0.04 14.4 1.9 1 23 388 410 388 410 0.96 9 22 0.0013 0.11 13.1 5.1 2 23 417 438 417 438 0.98 10 22 0.019 1.5 9.5 0.7 1 23 443 465 443 465 0.96 11 22 2.9e-06 0.00024 21.4 1.4 1 23 470 492 470 492 0.98 12 22 0.063 5.1 7.8 3.6 1 23 498 520 498 520 0.97 13 22 7.4e-05 0.006 17.0 0.3 1 23 526 548 526 548 0.99 14 22 0.0059 0.48 11.0 0.8 1 23 553 575 553 575 0.97 15 22 0.0061 0.5 11.0 0.9 1 23 581 604 581 604 0.95 16 22 0.00011 0.0091 16.4 2.5 1 23 610 632 610 632 0.98 17 22 0.81 66 4.3 5.6 1 23 638 660 638 660 0.97 18 22 0.00015 0.012 16.1 3.0 2 23 666 687 665 687 0.97 19 22 0.00084 0.068 13.7 0.2 1 23 693 715 693 715 0.95 20 22 2.2e-05 0.0018 18.7 1.0 2 23 722 744 721 744 0.97 21 22 1.1e-06 8.8e-05 22.8 0.1 1 23 771 793 771 793 0.97 22 22 0.012 1 10.0 0.2 3 23 800 821 798 821 0.96
Sequence Information
- Coding Sequence
- ATGGAGGAATCAAAAGAGAAGAAGTTCAGTATGAACTCTgaagaaaatataaacatcaaACAAGAGCCAGTAGATCATGAAGAAACTGAGGAACTTGTctattttaaacaagaaaacaTAAAACAGGAAGATCACAACCAAAACCTGATTCAATCCTTTGGAAACGAAATTTACATCACACCTAATGTAAAATCTGAACCAATAGATTCTGTAAAATGTCTAAAACAAGAAGACTACACACCAAACCTCAATCAATATTATCCAAGCATTAAGCCTGATCCCGATCCTGATacgaaaatgatttataaccCCTTTTCTCAAACGTATATCATTAACAAAGGATTTAAACTAGAAAGTTTAACTGAATCTGATATACAATTAGAAATCAATTATCTGGCATCACTTAGAAATGACTACAGTTGTCATATTTGCGGAAAAGTATTGTCCAATCGTTTCAATGTTAAGCAGCACATTTTAAAAGTGCACAAGGAATTGAAGACTATGATATGTCGTGTTTGTGGCGAAGCAACTTTGGACAGTGCTCATTTGCAGAGTCATTTGTACACCCACTTACAAGAACCGACTAAACCGTTTCCTTGCAGCTTTTGCAGCAGTGCTTTTATGCTTGAGAGCGGTTTAAAGGAACatgaacaaatatttcatgTCCAAGATTTGATGAAAAGGGATAGTAATGCTAATCAAATCGTAAATGAAATtggcataaaaataaaacaagaaccAGGAATTGAAATTGAGGATGAGGTGGTAGAAAACCCGTCAACGTGTAAAATCTGCGGAAAAGTAGCAGGTAGAAAGTTTACGATCAAGTATCATATGGATTCAATGCACTATGATCAAgataaatccaaaaataagGACCAGCCGGTCAATAGTTCGGGTAACAAATTCCAATGCATTCAATGTGAAAGTGAATTTGATCTAATTGATCAATTGGACAAGCACATGGGTCAGCATCCTGTCAAGCGTTACAAGTGCAACGATTGTAAAAAGGTATTTAAAATGATCTCGTACCTTCGCCGTCATTTGGAGGTTCACCAAGGAGCAAAACCGTTCATTTGCGATACTTGTGGCAGAGGTTTTATAAAGAAACGGTATTTAAACAAGCATATGGAAATTCATGTAAAccaagagaaaaaaatacactCATGCGATAAATGCGATGAGAAATTCTTCAAATGGGATATGCTAGTTAAGCACAAACTGGTTCACGGGGAGGAAAACCTAGAAAAGTGCGATCAGTGCGACAAGGTTTTTACATGTTCCGAACTGTTGAAGAAACACAAGAAAACCCACATTCCGAAAAATTTCCCCTGTCACTTGTGCAGTAAGAAGTTTGTTGAAGGTGAAAGATTGATTCTGCATTTGGAGAGGCACAAGTTTAGGGATTTTAAATGTGACTATTGTCCTAAGGCGTTTATGAATTTACACACTCTGAAAATTCACATGTTGATTCACACCGGTGTGAAAGAGTTCAATTGCAGTGCatgtgaaatgaaatttttccaTCGATCCAAAATGATTATCCACCAGAAATCGCACACAGAAAATGCGCCCTATAAATGCGATCAGTGCGAGAGGGAGTTTGGCAATTTAGGGGATTTGGGGAATCATCAAAAGACTCATGtcgaaaataaatacaagtGTGAACATTGTAGCGAGGAGTTTAATAACATTCTACTGTTCCGTGCCCACGAActtatacataataaaaacagcTATTACAAATGCCGAAAGTGTGGTCTAGAGTTTTTCGGGAAAGTAGTCTTCAAAAAGCACATGGAAGAAGATCACACCGATGGAAAGACctttaaatgtgtaaaatgCGAACTGAAGTTTTACTACAATTCAAATATGATCAAGCACATGAAACTGCACATCGAAGATGCACCTTACGAATGCGAGCTGTGTCACAAGCACCTTCCCAGTTTGGGCCATTTGGAATTTCATAAGAAGAAGCACGGAATTGCTTTGAGTGAGTGCGATATTTGCCACAAGAAATTTACATCGGATTTTGGGTTCAGGCGACACATGAACCTTCACAAAGATGGAAAGCCTTTCTTATGCACGGTTTGCACCAGAGGTTATATTTCTGAAGAGAAACTGCAAACCCACATGTTGGTTCACACAGgggaaaagaaaaataaatgctACATTTGCCAGAAGGCGTTCTTTTATGAATCGACTTTATCAAAACACATAAGAACTGTCCACGTCGACCTTGGACCGATAAAGTGCGAGAAGTTCTGTTTAAATAATCACGTAAAGGCCCGTCACACCGATACGAAGGATTACGTTTGCGAAATTTGCGGTAAAGGATATATTTCAAAGGGTAATTTAAAATCCCACATGGTCAATCACTTTGCTGGTCCAATTGCTTGCGATGTATGTGGAATTGAATTGACCACTTTATCTAGGCTTAAATACCACACAAAGAAATATCACCCTGAACTTGTTGAAGGACCATCTACCatttaa
- Protein Sequence
- MEESKEKKFSMNSEENINIKQEPVDHEETEELVYFKQENIKQEDHNQNLIQSFGNEIYITPNVKSEPIDSVKCLKQEDYTPNLNQYYPSIKPDPDPDTKMIYNPFSQTYIINKGFKLESLTESDIQLEINYLASLRNDYSCHICGKVLSNRFNVKQHILKVHKELKTMICRVCGEATLDSAHLQSHLYTHLQEPTKPFPCSFCSSAFMLESGLKEHEQIFHVQDLMKRDSNANQIVNEIGIKIKQEPGIEIEDEVVENPSTCKICGKVAGRKFTIKYHMDSMHYDQDKSKNKDQPVNSSGNKFQCIQCESEFDLIDQLDKHMGQHPVKRYKCNDCKKVFKMISYLRRHLEVHQGAKPFICDTCGRGFIKKRYLNKHMEIHVNQEKKIHSCDKCDEKFFKWDMLVKHKLVHGEENLEKCDQCDKVFTCSELLKKHKKTHIPKNFPCHLCSKKFVEGERLILHLERHKFRDFKCDYCPKAFMNLHTLKIHMLIHTGVKEFNCSACEMKFFHRSKMIIHQKSHTENAPYKCDQCEREFGNLGDLGNHQKTHVENKYKCEHCSEEFNNILLFRAHELIHNKNSYYKCRKCGLEFFGKVVFKKHMEEDHTDGKTFKCVKCELKFYYNSNMIKHMKLHIEDAPYECELCHKHLPSLGHLEFHKKKHGIALSECDICHKKFTSDFGFRRHMNLHKDGKPFLCTVCTRGYISEEKLQTHMLVHTGEKKNKCYICQKAFFYESTLSKHIRTVHVDLGPIKCEKFCLNNHVKARHTDTKDYVCEICGKGYISKGNLKSHMVNHFAGPIACDVCGIELTTLSRLKYHTKKYHPELVEGPSTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -