Calb005112.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- bab1
- Assembly
- GCA_001014945.1
- Location
- JXOV01041312.1:1459-9175[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.7e-14 2.6e-10 39.9 0.0 2 45 456 499 455 499 0.93 2 2 0.016 43 4.0 0.8 4 20 589 604 588 604 0.93
Sequence Information
- Coding Sequence
- ATGAACAGCATCGAAGGACAGACGTACTGCCTGCGATGGAACAACCATAAATCAAATCTGGTGGAGATATTGGACGCACTGATCAAAATGGAGTGCTACGTGGACTGTACGATCTACGTGGACGACCAGGTGCAGTTCAAGGCGCACCGTGTCGTCCTCGCCGCCAACTCGCCCTATTTCCAGTCCATATTGCAGGACGTCCCCATGGACCACTGCAGCATTCTCTTTCCCGGGGTCAAGGCCTTCGAGATGAGGGCTTTGCTAGAGTACATGTACACCGGTGAGGTGAACGTGACTCAGTCCCAGATCCCGCGAATCATGAAAATTGCTGAGCAGTTGGAGGTGAAGGGACTTTTTGACATGACAGATCTCAAGGATAAGTTCCACAAGTTGGACGACCACCCCCATCCGATGTATGGACACAATTTCTATCAGACTGCAGCCGCGGCGGCGGCGATGGCGGGCCGGAGGAGCAGCCAGAATAgcaatagtaataataacacaaataactcgAATAACAACTCAAATACCAACACAAACGGGAAGATCAACAACGGAGGACACTCGAGTGGAAACGGGAAATCGTCTCTAGAATCAAAGTTCAACCCACTGCGATCGTCTCCAGTCATTTCCACGGCAGCCTCGTCGACGAATGCCTCTTCTGGGCCAGTTCAAAGCAGCTCGTCGCCCCCTTTCAACTACAAGTCCTCGCATTACTCTAATCTCTACTCCCGCAGTCCAGTGCCATCCGCCTCCTCCTCCAGCCACGGTCCAGAGCGACTGCCGCAGTCCCCCTGGCCATCACACCTCCCCAATCCCCTGGCAACTCAGCAACACCTCCAAAACGCGGCAGTGGCCATGCTCAGCTCAGTCTACGAGTCCGGCTCAGACATGAATCCCCTGAAACGGAAGAAGCTCTCCTCAATGTCCAGTATGCTGATGTCGAACTCGGGAGACACCCCCATTTTAAGGAATGTCCTAGCTCAACCTAATATTGCGGACTCCTCGCAGGGCAACAATCCCAGCCAAGGCAATGAAAACTCAAGCGATAGACAAGGCAATTCTCAGCACAATGTGAGTGCGGGCAGCATCGGGGAACAGGAGAGGAACAACAGCACGGATAGACATTCGAATCAGTCCAACGGAAGTGCCGAATATGGAATGAAGATCAAGTACGAGGACGGGCACTCGCCATTCACGGACAAGTCCTTTGACGACGACGCCATGATGGATTCTAGTGCTTCGGGCCACAACTTTTCCGGTTCCATGTTGGATCCGCGGATGGCTGGCTTTGGACCGCCACCGCACATGGTGGGAGGACCTCACCACCAGAAGCCGGAGTGGAAGCGGTACAAGCAGTACACGAGGAACGACATTCTGGCGGCGATTGAGTGCGTGCGGAATGGGATGAGCGCGCTGCAGGCGTCGAGAAAGTTCGGAGTGCCATCGAGGACGTTATATGACAAGGTTAAGAAGCTGGGAATCACCACGGGTAGGCCAATGAATCGTTCAATCAAGAGGGAGGGCAGTGGAAATAGTCCAGCTGGTTTCCCTTATGGAATCAGTGGAATGAGTAGTCCTTATAACCTCCACCAGGGAGAGAATCCTCACCACGGGGAGAATATGATGGAGGGACGGGATCCGAACCATCTCCAGTCGACGATTCCTCACCCAGCGGCGGCGCTTCTGGATGCGACGTTCCTCCAACAGGCTTTGGAGGCGAGAGGAGGGGATATCGCAGGACGGGATGCTCTCCACGCGATGGCCTTTGCTGCAGCGGCCCATGCTGCGGTGAATGGCATGTCCACCAGTCCGGGTAACCACGGAACAGCCAGGTCGCCCAGCCCCAGCATTTTGATGAAGTACATGAGGCAGAACAGTGTCGACCAGCAGAATCAGGAGAATAGGGAGAGTGAGAACGAGATTAAAGCCAGTGGAAATCATTTGCCGGAGAGGAGGAGTGATGGACGAGAAGAGGATGATCGAGTCGAGGACTTGTCAATGGGAAAGAAGACAGATTCATCTCCTTCGTCTGTTGAAAATAGGGATGATCGAGAGGAAATGTCTCTACCTCATCGAAATTTGTTGACAGTGGCTCAGAATTTGATGAGAAACTCCCTCTCTCCGCCAGAGACTCTCGCTCGACAGCAGCAGAAATCCGACTCCCCGCCAGTGCCTTCGTCAACGCCCCCTATGATGGCTCCAGTCCAAACCACGATTCCCTCCTCGAACCAGCAGCAAGGAGTGATTGTCCAGTCGGTGATCAAGCAGCAGATCCCTCCAACCACAATAAAGGAGGAGATCCTGGATGAGCGACAAAGAGAGGTATCGATTGAAGAGGGAACAACAgactaa
- Protein Sequence
- MNSIEGQTYCLRWNNHKSNLVEILDALIKMECYVDCTIYVDDQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVKAFEMRALLEYMYTGEVNVTQSQIPRIMKIAEQLEVKGLFDMTDLKDKFHKLDDHPHPMYGHNFYQTAAAAAAMAGRRSSQNSNSNNNTNNSNNNSNTNTNGKINNGGHSSGNGKSSLESKFNPLRSSPVISTAASSTNASSGPVQSSSSPPFNYKSSHYSNLYSRSPVPSASSSSHGPERLPQSPWPSHLPNPLATQQHLQNAAVAMLSSVYESGSDMNPLKRKKLSSMSSMLMSNSGDTPILRNVLAQPNIADSSQGNNPSQGNENSSDRQGNSQHNVSAGSIGEQERNNSTDRHSNQSNGSAEYGMKIKYEDGHSPFTDKSFDDDAMMDSSASGHNFSGSMLDPRMAGFGPPPHMVGGPHHQKPEWKRYKQYTRNDILAAIECVRNGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRSIKREGSGNSPAGFPYGISGMSSPYNLHQGENPHHGENMMEGRDPNHLQSTIPHPAAALLDATFLQQALEARGGDIAGRDALHAMAFAAAAHAAVNGMSTSPGNHGTARSPSPSILMKYMRQNSVDQQNQENRESENEIKASGNHLPERRSDGREEDDRVEDLSMGKKTDSSPSSVENRDDREEMSLPHRNLLTVAQNLMRNSLSPPETLARQQQKSDSPPVPSSTPPMMAPVQTTIPSSNQQQGVIVQSVIKQQIPPTTIKEEILDERQREVSIEEGTTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00345174;
- 90% Identity
- iTF_00345174;
- 80% Identity
- iTF_00345174;