Calb002329.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- -
- Assembly
- GCA_001014945.1
- Location
- JXOV01004821.1:15275-16324[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-07 0.00039 20.1 0.0 3 38 202 237 201 241 0.88 2 3 0.055 1.5e+02 2.3 0.0 20 35 264 279 258 286 0.87 3 3 4.4e-13 1.2e-09 37.8 0.0 4 42 303 341 303 343 0.91
Sequence Information
- Coding Sequence
- ATGTCGGTATTGGCGACTTTAAAGTGGGTTAACCACACGGAGAGTATAATGAAGTATCAGAGTATCCTGCACAGTACTGAAAATCCTGAAACAGACACCGTCATTGCATGCCAAGGGAGAATCTTCTGCGTCCACAAGATAATACTGGTGAACAATTCGGATTTCTTCAAAGATATCCTTACAATTCAACCAGACCACATAGATCCAGTTATAATATTACCTGATGTAGATCCTACAGACATGGAATCCCTAATCACGTACTTGTATACTGGCCAGGCTGTGGTAGATACAGTTAACGTTGTCGCCTTTTTGGATATGTGCCGAAGCTTACAAATTAAGGGTCTAATGGAAAATGTGAGCCCCGAAATCACCTTTAAAGGCCCTGAAGAAGAGGTGAAAGGAGAAGTAACTATCATGGATGAACATTTCTCAGAAGAGGAGGAAGTAATTATTGAAGACGAGGATGAGGAAGTACCACAAGTCGAGGAAGAATATGAAGACGACATTGAAATCATCGTAGAGTCAGACAAATTGGATTCTGAACTCGATTCCAGTGACAAACAGGATTCAACTACTGAGAAAAGAGGGCAGGAAAATTTCGAAGACACTGCGGCCGAAGCAATAGACAAACTATTGACAGGAATGTCTTTGAAGGAGTGCAGTCAAATGTTTAACATTTCCAAGACAGCTCTGTGGCGACGAGCAAAGAAATTGGATGCTTACAAGACCACAAGAAAAAAGGTGAACCGATGTGATGCTGAGGAGGCCATGTTAAGGGGAGAGAAGCTGAGCAAGATTAGTAAAAAGTACAAGGTTCCATTGGCCACCCTCTATAGAGACAAGATGAGGTTAATCAACGAGGGTAAAATAGGACATGGGAAGAGAGCCAAGGGGGATGTCAGCATTAACATGGACCTGGCAATTGAAGCTTGTCTAACGGAAAAACTCACTCAAAGCGAAGCAGCGAAAAAATACTGCGTCTCCAAAACAACCCTTTGGAGGAAAATGAAGAGAATACCCCAAAAAGATGTGAAGGATTAtgtatcttaa
- Protein Sequence
- MSVLATLKWVNHTESIMKYQSILHSTENPETDTVIACQGRIFCVHKIILVNNSDFFKDILTIQPDHIDPVIILPDVDPTDMESLITYLYTGQAVVDTVNVVAFLDMCRSLQIKGLMENVSPEITFKGPEEEVKGEVTIMDEHFSEEEEVIIEDEDEEVPQVEEEYEDDIEIIVESDKLDSELDSSDKQDSTTEKRGQENFEDTAAEAIDKLLTGMSLKECSQMFNISKTALWRRAKKLDAYKTTRKKVNRCDAEEAMLRGEKLSKISKKYKVPLATLYRDKMRLINEGKIGHGKRAKGDVSINMDLAIEACLTEKLTQSEAAKKYCVSKTTLWRKMKRIPQKDVKDYVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00345204;
- 90% Identity
- iTF_00345204;
- 80% Identity
- iTF_00345204;