Calb012082.1
Basic Information
- Insect
- Clogmia albipunctata
- Gene Symbol
- -
- Assembly
- GCA_001014945.1
- Location
- JXOV01019745.1:28162-31705[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-13 4.4e-10 39.1 0.0 1 40 243 283 243 286 0.93 2 4 1.8e-11 4.7e-08 32.7 0.0 7 44 301 339 295 340 0.82 3 4 1.3e-14 3.5e-11 42.7 0.0 1 45 350 395 350 395 0.96 4 4 7.4e-14 2e-10 40.3 0.0 3 38 404 439 402 444 0.90
Sequence Information
- Coding Sequence
- atggagACAAGGGAGAATATAATTGAAAGTGAATTATTCAGTCGAAATAATAACAACACAACAACAGCTACACCACCATCATCCACCACGACGGCGGATGAGAATGGAAAGAATGacgacaattttaaaatgctaaTTAACCCGCCCCATCAGCAACACTACCAGCATCCCAGTGGTCAGCCTCCTGCAGCCGGAGAAATGGTTGACAACAACGGCCTGACGTCTTCCTCCTCCACCACCTCCAACTCGATGCCTCCGAGCCAACAGCATCCGATCAATGCCAATAATATTAACACAATATATAGTGATAGCagcataaataataatagtaacaTTAACATAAGTAATAATAGTACTTATCAAGGCGATCCGAACCTGATGGTGCACAGCGAGGACACGATGGGCAGTGGAGGGACTTCGGGCGGGGACTCCAACGAGAGCAACAGTAATCTCAATTTAGACGATTCAATGGCCTCTGTCCCGCCAACCAGTGACGGTGGCTCTCTCATCTCCACCCCGAACAGTGGCTCTGGTGCGACAAACGCGACCAGTATGGCCACGGACGAGGATTCTTCGGACCCCAACGCGAAAAAGTACAAGTGCTCTGAGTGCAACAAAATTTACGTAAGGGAGTTCCAATTGAACACCCACTTCCGACGACATCACCCTGAAAATCTGAAATCCCTAGAGACATCTCCCCCGGCGACGGGTAAAAATAACTCATGGACTCCGGAGAGTATGGAGGAGGCGTTGGATGCATTGAAGAATGAAAGAATGACCCTAGTTAAGGCCTCCCACCACTACGGAATTCCAGCGTCTACGTTGTGGCAGAGAGCGACTCGCCTGGGCATTATGATGCCAAAGAACTGCACTAGAACTTCCTCCAAGGACGGCATTGCCGACGCCGTTCAATTGCTTAAAACCGGTCAGATATCCGTGAATAAGGCGTCCAAAGTATTTGGGATTCCTCCGTCGACACTGTACAAAATCGCCAAGCGGGAAGGCATTCAACTATCGTCACCGTTCAACACGGCTTCCACCAGTTGGACACAGGAGAACCTCCAATTGGCCATGGACGCTATCCGTAACGGTCAAATGAGCGTCCATATGGCGAGTGTAGAATATAAAATACCCCCTGGAACACTCTATGGTCGATGTAAACGAGAGGGCTTAGAACTGTCACGAACTAACCCCGTTCAGTGGTCGCCTCGAGACCTAAAGAACGCCCTCGAGGCAGTCAAAACCGGCCAAATGTCCATCAATCAGGCTTCGGAACACTACAAAATATCATACAGTTCCTTGTACAAACGAGTGAAGCCCCATCagaataacaacaacaataacaacaataataatattcacatCAAACAAGAGCTTGAGACTGAAAACGTGGAGATGGTGGTTGACTACGGGTCTGGGAGACTGCATCAGGACCCACAACAAATACAACATCATCCTTACatgcaacagcagcagcagcagcaacaacaacagcaaacTCATTTGCACCATCATCAGCAGCCTCAACAGCAAATGCATTACAGCCAGCAGCAGCATGTGATCCACCACCAGCCAACCCAAGCTACGACTATCCACCACCAGCATCCACACCATCATCATGGCATCGGTCAACAGACGGCGCCTCAGCATTTAGTAAGACAGCATCACCACCAGCCTCAGACCATAATAAATACGATAGACCCATTGAACGAGCATCCCTCGCAAATACACCACCATCACCAACAGcaccagcagcaacaacaTCACATAATTCAGCAGCACAGCGTAAACCTTAACGGCAGTGCCCAAATTCATcaccaacagcagcagcagcaacaacaacagcagcatcATCTTCACCAACAGCATCCCGAGGACAATCGCTACAGCCAACAGGCAACAACCAATCTACTCAACCCGTGCGACGACGTTGACAAGCACGAGCTTACGTCGAGCAGTGGTATAGGACTGGTGAGTAACATAATAAGcataagtaaattaatatctattgaattttgctataaaatattGGATAAGAATAAAACTAGCGTAAATTCCTAA
- Protein Sequence
- METRENIIESELFSRNNNNTTTATPPSSTTTADENGKNDDNFKMLINPPHQQHYQHPSGQPPAAGEMVDNNGLTSSSSTTSNSMPPSQQHPINANNINTIYSDSSINNNSNINISNNSTYQGDPNLMVHSEDTMGSGGTSGGDSNESNSNLNLDDSMASVPPTSDGGSLISTPNSGSGATNATSMATDEDSSDPNAKKYKCSECNKIYVREFQLNTHFRRHHPENLKSLETSPPATGKNNSWTPESMEEALDALKNERMTLVKASHHYGIPASTLWQRATRLGIMMPKNCTRTSSKDGIADAVQLLKTGQISVNKASKVFGIPPSTLYKIAKREGIQLSSPFNTASTSWTQENLQLAMDAIRNGQMSVHMASVEYKIPPGTLYGRCKREGLELSRTNPVQWSPRDLKNALEAVKTGQMSINQASEHYKISYSSLYKRVKPHQNNNNNNNNNNIHIKQELETENVEMVVDYGSGRLHQDPQQIQHHPYMQQQQQQQQQQQTHLHHHQQPQQQMHYSQQQHVIHHQPTQATTIHHQHPHHHHGIGQQTAPQHLVRQHHHQPQTIINTIDPLNEHPSQIHHHHQQHQQQQHHIIQQHSVNLNGSAQIHHQQQQQQQQQQHHLHQQHPEDNRYSQQATTNLLNPCDDVDKHELTSSSGIGLVSNIISISKLISIEFCYKILDKNKTSVNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -