Basic Information

Insect: Clogmia albipunctata
Gene Symbol: bab2
Assembly: GCA_001014945.1
Location: JXOV01019745.1:1830-27342[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 6.2e-13 1.6e-09 37.3 0.0 1 39 644 683 644 687 0.90

2 4 1.2e-12 3.2e-09 36.4 0.1 1 39 698 736 698 739 0.94

3 4 4.1e-16 1.1e-12 47.5 0.0 1 45 753 798 753 798 0.97

4 4 8e-20 2.1e-16 59.4 0.1 1 43 805 848 805 849 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	6.2e-13	1.6e-09	37.3	0.0	1	39	644	683	644	687	0.90
2	4	1.2e-12	3.2e-09	36.4	0.1	1	39	698	736	698	739	0.94
3	4	4.1e-16	1.1e-12	47.5	0.0	1	45	753	798	753	798	0.97
4	4	8e-20	2.1e-16	59.4	0.1	1	43	805	848	805	849	0.96

Sequence Information

Coding Sequence: ATGCGCAGGAAGATCATAAACAGGAACAAATTCTTTCCTCCTATTTGCCACCTGGAGGTGGAGGGATCGGGTAGTTCCAGGGGACACTCTACCGGCTACGCGTCCagtaataacaataacaacTATTACTATCCGACCGCCAAGAAAATGTCGTCCTCAACGGCACAGAGCAGCATTTTAAACGCGACCGGGGGCGGCAGCATAGGGATAGAGAGCGGAAGCTATGCTCAGATCGGTGGGAATCAGTACTTTAGCCTTAGGTGGAACAATTATCAAAACAATCTCACCTCTGTGTTCCATGAACTTCTCGAGAATCAGTCCTTTGTTGACGTGACTCTGGCCTGTGAAGAAAACTCCCTCAAAGCACACAAAGTTGTACTGTCGGCTTGTTCAGAATACTTTCAAAAAGTATTGTTGGAGAATCCTTGTGAACATCCAACCATTATTCTGCCCGGTGAAATTTGCTTTTCCGATCTGCAGTTTATCATTGAATTTGTATATCGGGGGGAGATCGATGTGTCTGAACTGGAACTTCAGAGTCTATTACGAACAGCTGATCACTTGAAAATAAAGGGATTATGCGAACTGACTGATCACAGAGACGAAACACAGAGTTTTCTCTCGTCCACCTTAGCCGCCGCCGCCTCCTCAGCGAACCCACCTCTAGTGCAACAGCAACAAGTGCTGCAGCCGCCAATCAAGCGAGCCAAGACTGTATCATCATCAACATCTTCATTATCTCATCAGAAGGGATACGCCCCGCATAGCAGTAGTAACACAATTAGCAGTAATATTAGCAATAGTAATATATCTAGCTCTAAACAGCAACTAAATAGTGTAACAACTACCAGTCAATATAGTAATTTGGTGACGAATACGAATAACCAAACCGAGACAAGTGTTGGCAAGTCCAAAGGGACCATAGATAAAGAGGACAAAACAGGAAAGAATGATAACAGTGAGACACTAGTTGTTTATGATCAGAAAAGCTCAACAGAAAGTTCTGTAACATCAACACCTcgtgataataaaaatatggccAGCCTGGGTATGGGAATGaaCGGAGGTCTTATGGGAGTGCCAATGGGTTATTTAGACTTTGCACCCGAGCCACCAGCACCGTCTGCCACCCCGGTTACAGAGCACGTCGATCTGAGTTGCACCCCTAGCTCTACAGACACCCGAGATCTATCAAtcCATTTTCCTCCTCTTGGCTTTCACACAGATTCGACGCCCCATAATGAAATTCGCATAAAATTCGAGACTCTCCGTTCATTGGATCCCAACGATAATCTGGGCCAAGCGATGCACAATATGCAGCACATGGACAATCAAGGACAGCAACAGCAGCCCACAAATGGCACCTCATCCGCTCAGCCATCAAGCACAGTGTCGACTGGACCAATAATGGAGTCACCATCCCctcagcagcaacagcagcagcagcagatcAACATCAACACTAACGGTAATCACAATGCCGCCGATCAGCAAAACCGTGAGTCACCTATCCAAAAGCAACAGCAACAAGAGTCGCCTTCACCGCATTCAACTCAAATCATCACGTCGATGCCAAACAGCTCTACGATGCACACGAGCACAGTGCCGACCATTACTAACTCGGGTGCATCGTCTATGGATTTGGACCAGGCTTCGGTGGTGCAGAACATCAAAATGGAGACTGAACCGTCGATGAACGTGATTGTGAAGCAAGAGATTGTTAACCTGATGAATCCGGGTCAGATGGAAATGTACCATTCTGACGCGAGCGAGGACTCTAAGCTAATGTCGAATGGGTCCCGGAGCATCACTCCCAACTCCCAGTACAACTATTCGAACAACAACGGGGCGAATAACAATAATGGCAATAACAGTGCTAACAACGGGCAGAATAACGAGAACAGGACACCTGGGGGGCCGAAAACTTGGACCCAAGAGGACATGGAGGCAGCACTGGACGCTCTTCGAAACCACAACATGAGTCTGACAAAGGCGTCCGTCACCTACGGGATTCCTTCCACTACGCTGTGGCAACGCGCTCATCGTCTCGGTATTGACACTCCCAAGAAGGAGGGTCCTACCAAGTCGTGGAGCGAAGACTCTTTGAACAATGCCTTGGAAGCTTTGAGGACTGGGACCATTTCCGCGAATAAAGCCTCTAAAGCTTTCGGTATTCCTTCGTCTACCTTGTATAAGATAGCTCGTCGCGAAGGGATTCGTTTAGCAGCGCCGTTCAATGCTGCACCCACTACTTGGACCCAAGAGGACCTTGAGCGTGCCCTCGAGTCAATTCGAGCCGGACAGTCTTCGGTCCAGCGAGCCAGTACAGAGTTTGGAATCCCGACAGGAACTCTCTACGGACGCTGCAAAAGGGAGGGAATTGAGTTATCGCGGTCAAATCCGACACCGTGGTCCGAAGACGCTATGATGGAAGCCTTAGAAGCTGTTCGAGTGGGACAAATGTCCATCAATCAAGCTGCCATACATTATAATTTGCCATATAGTTCTTTATACGGCCGATTCAAGAGGGGAAAGTACGATACAACTGGTGACAATACTCAGGCCGTAGTGGACCAAAGTCCAGAAAATTCGCAACACCAACAGCAGGCATTCAGTCCAGTAAttcaacaacagcagcagatCCATCATCAACTGCATAGTAATAACGGAACGCCTCAACCTCAACAACAGTCGCCCCATTTGCAGCAATTGCAAATCCATCAGCATCACTCCCCATCTCCAACGctgcagcagcagcaacaacatcagcagcagcagacgATGGCCATCACAATTAGGAATAGTGTCAACAATATTTTAGAGATCCCACAAGCGCCTCTCTCGTCCACAAATCCGGGAATGAACACGATTCAGCCCCACTATTTGCATCCCCAGCCGATACTCCAGCCGCAGCCCCAACTGCTCCATCATCAGCTGCATCACCAGTTCCAGCCGTATTCCATGGACAGATTCGAAATCAAGCAGGAGAAAAATCCATAA
Protein Sequence: MRRKIINRNKFFPPICHLEVEGSGSSRGHSTGYASSNNNNNYYYPTAKKMSSSTAQSSILNATGGGSIGIESGSYAQIGGNQYFSLRWNNYQNNLTSVFHELLENQSFVDVTLACEENSLKAHKVVLSACSEYFQKVLLENPCEHPTIILPGEICFSDLQFIIEFVYRGEIDVSELELQSLLRTADHLKIKGLCELTDHRDETQSFLSSTLAAAASSANPPLVQQQQVLQPPIKRAKTVSSSTSSLSHQKGYAPHSSSNTISSNISNSNISSSKQQLNSVTTTSQYSNLVTNTNNQTETSVGKSKGTIDKEDKTGKNDNSETLVVYDQKSSTESSVTSTPRDNKNMASLGMGMNGGLMGVPMGYLDFAPEPPAPSATPVTEHVDLSCTPSSTDTRDLSIHFPPLGFHTDSTPHNEIRIKFETLRSLDPNDNLGQAMHNMQHMDNQGQQQQPTNGTSSAQPSSTVSTGPIMESPSPQQQQQQQQININTNGNHNAADQQNRESPIQKQQQQESPSPHSTQIITSMPNSSTMHTSTVPTITNSGASSMDLDQASVVQNIKMETEPSMNVIVKQEIVNLMNPGQMEMYHSDASEDSKLMSNGSRSITPNSQYNYSNNNGANNNNGNNSANNGQNNENRTPGGPKTWTQEDMEAALDALRNHNMSLTKASVTYGIPSTTLWQRAHRLGIDTPKKEGPTKSWSEDSLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTQEDLERALESIRAGQSSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDTTGDNTQAVVDQSPENSQHQQQAFSPVIQQQQQIHHQLHSNNGTPQPQQQSPHLQQLQIHQHHSPSPTLQQQQQHQQQQTMAITIRNSVNNILEIPQAPLSSTNPGMNTIQPHYLHPQPILQPQPQLLHHQLHHQFQPYSMDRFEIKQEKNP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00345168;
90% Identity: iTF_00345168;
80% Identity: iTF_00345168;