Cdip016614.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- stc
- Assembly
- GCA_949628265.1
- Location
- OX451263.1:25020099-25026097[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.19 1.7e+03 -0.8 2.9 3 10 299 306 298 307 0.92 2 15 5.8e-06 0.054 13.6 17.3 3 18 321 336 320 337 0.93 3 15 2.6e-07 0.0024 17.9 12.2 1 18 373 390 373 391 0.97 4 15 0.23 2.1e+03 -1.1 3.9 4 10 420 426 419 428 0.94 5 15 8.3e-06 0.078 13.1 13.3 1 19 432 450 432 450 0.99 6 15 1.7e-06 0.016 15.3 16.7 3 19 495 511 494 511 0.93 7 15 1.5 1.4e+04 -3.7 1.8 5 10 538 543 538 543 0.94 8 15 1.5 1.4e+04 -3.7 9.0 3 11 551 559 549 560 0.86 9 15 0.21 2e+03 -1.0 0.9 4 10 564 570 563 570 0.93 10 15 1.5e-08 0.00014 21.9 10.3 1 18 576 593 576 594 0.97 11 15 1.9 1.8e+04 -4.1 1.4 6 10 623 627 622 627 0.83 12 15 2 1.9e+04 -4.9 9.3 10 19 640 650 633 650 0.80 13 15 1.7e-05 0.16 12.1 16.4 1 16 686 701 686 709 0.91 14 15 0.0047 43 4.3 11.7 1 16 716 731 716 736 0.85 15 15 0.22 2e+03 -1.0 0.1 8 12 752 756 751 757 0.81
Sequence Information
- Coding Sequence
- ATGGCATACGGTGGAAACAACTGGAACGGCTACAACCCGAATTTTACTGGCGAGCAACAGTTTTTCAACAGTCAGCTCAACCCAGATGCGCAAGGCCGGCCACCGTGGCACCAGGAATGGGATCCAATTTCTCAATACTATTACAATGGCTCACAGTCAGTGCCCCCAGCTGCAAACAGGACGCCAGCGAGGAACTTCCAATTCTCTCAGAACAGAGGCCCTAGAAACTTTACTCCCCAGCAAAACCGTCAGCCGCGAAACAATAacaatcagcagcagcaatcaCCTGCTGGCGAGCAGCAAGAACGACGTCGGTTAAAACAGAATCCACGTCCGAATCCAAACAGTGAGCCTATCAGGCCCTTGATGAGTGAAAGCCAAGACAATCAAGCTCCTGTTGAGACTCCTGAGAGCACTGCTGAAGGTGGCCGTCCAAGACCAGGAAAAAGGTGGAGTCGTGAGGGAGAAGCAGGAAGACAAAATTCGCATGGGAATGGCTATTTTTACTCGGAGCCTGACAATTCGTCGACCAAAGAAAACGAGCAACAAAAACCCATTCCTCCAAAACGACAATTTAATCCACCAAAGCCAAATTTTAGGAATAAAGaCATGTCACAACGAGAGTTCCTCATTTACCAAATGAACGCTGAAAGGTTGGAGTGCATGGTTTGCTACGAGTCGATCAAGCACAAGAATCCGATTTGGAGCTGCTCCGGCTGCTTCAACCTTTTCCACATCTGGTGCGTGCAGAAGTGGTCCAGGTCGACTGACGGCGAGGAAGGCTGGCGCTGCCCTGGCTGCAACATGGGATACCAGAAGATGCCCGAGAAATCGTGCTACTGCGGCAAAACGCTGCAGCAGGCGAGAGACATGAATCTGAAAAGCTACAGCAGCAAGCATTGTTGCGAGgaaatttgcttcaaaaagCGGCCGAGGGCGGTGACCGCTAAGTTCGATTGCGAACATCCGTGCAGCGAGATGTGCCATCCGGGTCCTTGCCCTCCATGCGAAGGAATGTCTCTCAGacatTGCCCTTGTGGAAAGAAGTCGACTCGCGTGAAATGCGGCGTCGACACGGATTTGCTCTGTGATAACACCTGCGATAAGCTGCTTGCCTGCGGCAGGCACAGGTGCCCTGACCAGTGCCATGCCGGATCGTGCAGCGAGTGCTTGCTTCCCATCGACCtagAGTGCATGTGTGGCCAAGAGAAGAAGGAAGTTGTGTGCAAGGACGCCCCCAAAGGAGACCTGAGCTGCCACTCATGCAAAAAACCATGCGGCAAACAGCTGGAGTGTGGAAATCATATGTGTGCGGATGAGTGCCACGCTCCTCCATGTTCACCATGCCCTCTTTTGCCAGAGATCAACACGAGGTGCCTTTGTGGCAAAGTTTCCCagtctttgctgctgctgagccCGAGAAAGTCGTGCCTTGACCCTGTGCCTCAGTGCCCAAACAAGTGCAACAGAACTCTGCTGTGTGAACACAACTGCCCTGAGAAGTGTCACACAGGTGACTGTCCACCGTGCCAATTGCAATCACAGCGGTACTGCGCGTGTGGCTCCTCCAAAAAGATGATTCCCTGCTCTCTTGTTGCGTTCGACGCTGTCACTTGCAACAAAAAGTGCACAAAgtGGCTGTCTTGCTTGCGGCACAAATGCCACGACATCTGCTGTCGGCGCGAAACGCACGATTGCCTGCAGCTGTGCAACAAATTCCTCAACTGCGGTAGACACAAGTGCGACGCCCTGTGCCACACCGACCGATGCCCACCGTGCCTTCTAGCTAGTTTTGACGAATTGCGGTGCGAGTGTCAGACGGAAGTAATTTACCCTCCTGTTCCGTGCGGCACGAGGCCGCCGCAGTGCAGCAAACCCTGCACGAGGAGCCACCCTTGTGGCCACAACAGTCACAATTGCCACAGCGAGGAAGAGTGTCCGCCGTGCACTGTGCAAGTCAGGAAGTGGTGCATGGGAAAGCACAAggAAGTGTATCCAGTGCTATGCAACCAGGAGTTTGTGTCTTGCCACCTACTTTGCGGCAAGCCTTTGGAGTGTGGCCAGCACCACTGCATCAAAAAGTGCCACGCCGGCCCGTGTCTCAATGAACGGTGCACGCAGTCATGCACAAAGCAGAGGGCCGAGTGCGGCCACTCGTGTAACTCACCCTGCCATGGAGCTTCCCCTTGTCCAGACACAAAATGCATGTTTGAGTTGAAAGTGACGTGTGAGTGCAAGACAATTAGCGAAATCCGTCCGTGCCACAAGCAGCTGGAAGCGTACAAGAAAAAAGTTCAGATGGAAGCGCTGGTTGAGAACATGTCTGACCTGATGCAAGGACACAAGGTGCCTTTGCCTGGTGCCGTGCCGCTGGCCCACTGGACCATGGTGGTCGGACTCGAGTGTGACCACAATTGTGCCGTCAAAAAACGCAACGACAAGTTCTTCATTGGGCTCCAAATCGTCAATCCGGACCTTGGGCAGAAACTCAAGCTTGACTACCCTTCAAGCCTGCAAAACTGGGTCGCGCAGGACAAGGAGTTCGTCAAGGAGGTGCATAATACTCTTGCTGAACTGGTCCTCTGCACTCAAAAGGGCACCCAGCGATTCCGAATGCACAGTTTTGGCGTGATGAACCAAGCGAAACGCAAATTCGTACACGAATATTCAACCTACTTTGGCCTCACCTCGCATTCCATCGACAAGAGACATTCCAGGAGCGTGGACGTGACTGCTGAAAagaataatTGCTGGATTCCAAGTATAAGTCTGCATGAAATGGTCGGAAAGAAACTGAGCCACTCCAATTCAAAGTGA
- Protein Sequence
- MAYGGNNWNGYNPNFTGEQQFFNSQLNPDAQGRPPWHQEWDPISQYYYNGSQSVPPAANRTPARNFQFSQNRGPRNFTPQQNRQPRNNNNQQQQSPAGEQQERRRLKQNPRPNPNSEPIRPLMSESQDNQAPVETPESTAEGGRPRPGKRWSREGEAGRQNSHGNGYFYSEPDNSSTKENEQQKPIPPKRQFNPPKPNFRNKDMSQREFLIYQMNAERLECMVCYESIKHKNPIWSCSGCFNLFHIWCVQKWSRSTDGEEGWRCPGCNMGYQKMPEKSCYCGKTLQQARDMNLKSYSSKHCCEEICFKKRPRAVTAKFDCEHPCSEMCHPGPCPPCEGMSLRHCPCGKKSTRVKCGVDTDLLCDNTCDKLLACGRHRCPDQCHAGSCSECLLPIDLECMCGQEKKEVVCKDAPKGDLSCHSCKKPCGKQLECGNHMCADECHAPPCSPCPLLPEINTRCLCGKVSQSLLLLSPRKSCLDPVPQCPNKCNRTLLCEHNCPEKCHTGDCPPCQLQSQRYCACGSSKKMIPCSLVAFDAVTCNKKCTKWLSCLRHKCHDICCRRETHDCLQLCNKFLNCGRHKCDALCHTDRCPPCLLASFDELRCECQTEVIYPPVPCGTRPPQCSKPCTRSHPCGHNSHNCHSEEECPPCTVQVRKWCMGKHKEVYPVLCNQEFVSCHLLCGKPLECGQHHCIKKCHAGPCLNERCTQSCTKQRAECGHSCNSPCHGASPCPDTKCMFELKVTCECKTISEIRPCHKQLEAYKKKVQMEALVENMSDLMQGHKVPLPGAVPLAHWTMVVGLECDHNCAVKKRNDKFFIGLQIVNPDLGQKLKLDYPSSLQNWVAQDKEFVKEVHNTLAELVLCTQKGTQRFRMHSFGVMNQAKRKFVHEYSTYFGLTSHSIDKRHSRSVDVTAEKNNCWIPSISLHEMVGKKLSHSNSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -