Cdip013821.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cloeon dipterum
Gene Symbol
-
Assembly
GCA_949628265.1
Location
OX451262.1:31373489-31382160[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 3.7 2.6e+02 2.4 1.2 2 23 203 227 202 227 0.92
2 25 0.017 1.2 9.8 0.3 3 23 233 256 232 256 0.93
3 25 0.19 13 6.5 4.7 1 23 265 288 265 288 0.96
4 25 3.6 2.6e+02 2.4 2.8 1 23 293 316 293 316 0.92
5 25 0.015 1.1 9.9 1.4 1 19 368 386 368 391 0.83
6 25 0.00039 0.028 14.9 2.8 2 23 429 451 428 451 0.97
7 25 0.00052 0.037 14.5 4.6 1 23 502 525 502 525 0.97
8 25 7.3e-05 0.0052 17.2 1.3 2 23 563 585 562 585 0.96
9 25 1.3 92 3.9 0.7 3 21 590 607 588 608 0.87
10 25 0.011 0.78 10.4 1.6 3 23 891 914 890 914 0.90
11 25 0.17 12 6.6 3.0 1 23 926 949 926 949 0.92
12 25 4.9 3.5e+02 2.0 0.5 1 23 954 977 954 977 0.83
13 25 1.2e-05 0.00087 19.7 0.5 2 23 1015 1037 1014 1037 0.96
14 25 0.31 22 5.8 4.8 2 23 1044 1066 1043 1066 0.96
15 25 0.067 4.8 7.9 0.2 2 23 1072 1094 1071 1094 0.92
16 25 0.00038 0.027 15.0 1.9 2 23 1165 1187 1164 1187 0.94
17 25 8.6e-06 0.00062 20.1 0.9 1 21 1238 1258 1238 1262 0.91
18 25 1.3 93 3.8 5.9 1 23 1268 1291 1268 1291 0.97
19 25 0.00033 0.024 15.1 1.7 2 23 1297 1319 1296 1319 0.94
20 25 0.15 11 6.8 5.5 1 23 1377 1400 1377 1400 0.97
21 25 0.0058 0.42 11.2 2.3 2 23 1406 1428 1405 1428 0.94
22 25 0.00017 0.012 16.1 0.8 1 23 1585 1608 1585 1608 0.97
23 25 0.16 11 6.7 6.2 1 23 1613 1636 1613 1636 0.95
24 25 0.017 1.2 9.8 2.6 2 23 1642 1664 1641 1664 0.96
25 25 4.7e-05 0.0034 17.8 2.0 1 23 1717 1740 1717 1740 0.96

Sequence Information

Coding Sequence
ATGCAGCCGCCGACaggcaaaaaaggaaaacctccgattcaaaagccgctgtgccgcctgtgcgagtgtccgacgtcggacggccacgtccgcgcgtcgcaggtggacaggaTCAAGCTGCGGACATGGGCCATGAAGGTCTTGGACCTGAGAGCAAGAGATGGAAATTTGCCGATGTTGATCGGAGAGGACCatttgatctgctatttttgcatctggcaggccgaGTTTGATGATGAGTCTGGAGATGATTCCCTtgcttggtggccgaaaaaccttgatttggCAGAGAACGCTAAGATTCTTCGagagaattattcagCTGGGGAGGTTGatcagtgttgggtgcagttggaagagGTTGATCTTGACAAACAAACAGAGGAAATCCCCAAGAAAAGGAAACGACGCGTCGGTGGAGTGTGTATTTACTGCGGCAACCGTTACAATCAACTGATGGAGCACGTCAAACTGATGCATAAAAAAGCCATCAAATGCGGATTTTATGGCTGCACGACATATTTTCACACCGAgaaggaaaaagagcagcacatgcagGAGGACATCTACGCAAAACACTTCAAACGAAGGGAAAGGAGGAATGTtcgttgcaaattttgtaaaaacgtcaaattttcACGCTCATTGGAAGTTTTGCGGGCGCACATGAACCGCTTCCATCCGGAACTGGTGGCGTGCACGCGAGTAGGCTGCAAAGAGTACTTCAAAAGCAAGTCCGAAATGATTCAACACATCATCTCGTCGCACAAACGAGCCATAAATCAAGATCATTTCAAGTGCATGCAATGTGAATATTTCACTACGGTAAAgtgcaatttgaaaaaacacgTAGAGTCGAAGCACATGCCAAAGACCTTCAAATGCGACAGTTGCGACGCCAAATTCGGCTCGAAACGGATAGTGAACAGGCACTACCAACTTTGTCACACGTCcacaaaatgcaaatcttGCGGCCAGGAGGTGGTTCTCGGATACAAGCCAATCCACGGAAGGCCAACGGTTTGCTCCACATGCAAACGCAGTTTCGACTGCTTGGGTGTGTTTCTATTTCATAAAAAGATGTGCTGCGAAGAAAACATCCATAAATGCGAAGAGTGCGGAAAAGAATTCCCCAAGAGTTGGAACTTAGATTGCCACGTGGTTAGAGTTCACGCCAAACCTGTCAAAGCCGAGTATTTCCGCTGCGAGCATTGCAACTATTCGACATTACACAAGAGTCGCGTTACGGAGCACATGCATTGGAGCCATTTTCCAAAGACGATCAAGTGTGACGAGTGCGACAAATTGTTCGCCACTGAATCTTTTCTCAAGCATCACAAGCGCAGGTCGCACCAAAACGTCCATTGCGCAGAGTGCGCGCAGGAGGTGCCCCGTCACACCATGTCTAATCACCGGCTTTCCAAGGCTTGCCACCGCTGCAAGGGCAAGTTCAGGTGCGCAGGTTTGTACCAATTGCATTGGGAGAACTGCAAACAAACCGTCTTTACTTGCAAGGAGTGTGGAAAAATGTTCACCATCCATTGTGAGTTGAGTCGCCACGTGAAGAGAGTTCACACCAAAACTGTCAAAACCGCTGTTTTTCTCTGCGCGCATTGCGACCATTCTTCAACTGACAAGAGACGCATGTCGGATCACATGCAATGCAGACATCTTCCGAAGAAGATTAAGTGCAAGGAGTGCAACACAAGGTATGCCTCGCAATATTTTCTCAAGCGTCACATAAACCGGTGGCACGAATACGTTCATTGCTCAGAGTGTGGGCAGGAGGTACGCCGTCACGCCATGTTTCGACACCGGCGCATCAAGACCTGCCGCTACTGCGAACGCAAGGCGGGCTGCTCAGGACTTCTGGAACAGCACGAGAAGAACTGCCGGATAAATTCAaagcagcggggtccagattcAATCCCTTTTTGGGACAGATTTTCTTCGAAAGACGATTCAAACCTAGAGATGCAGTCGAGAAGAGTCAAAAAGGGAAAATCTCCcattcaaaagccgctgtgcagactgtgcgagtgtccgacgtcggacggccacgtcctcgcgtcgcaggtggacaggttcaagctgaggaaatgggccatgaAGGTCTtgaacctgacggaagaagacgaaaacttgccgGACGTGGTCGAAGAAGACtctttgatctgctatttttgcatgtGGCATGCCGAGTTTGGGGATGAGTCTGGTGACGAGGCTGTTGCTTGGTGgccaaaaaatcttgatttggagGAAAACGCTAGGGTGCTGCGGGAGAATTACTCAGTTGGAGATgcagagcagtgttgggttcAGTTGGAAGAGATTGATTTCGCCAAATACGAAAAGAAAATCcctaaaaaaaggaaattggtCAGTGGAGTGTGTTTTTACTGCGGCAACAGTTACAACCAACTGATGGAACACGTCAAACTgatgcacaaagaagccatcaaatgcgGAATCTGGGGCTGCGCCACATTTTTTCAcaccgaggaggaaaaagagcagcacatgcagcagGTTTCACACGAGAAACGAAGAAAACCATGCGAACGCAAGGAAATtcgttgcaaattttgtgacGACGTTCATTTATTTGCCTCATGGAAAACGTGGAGGTGCCACATGAGTCAAGCACATCCGGAATTTTCGGTGGCGTGCAGCCATCACGGCTGCAAGGAGATCTTCAAATCCAAGTCGGAATTGATTCTCCATGTCAACTCGTGGCACAAACGGCACGAACAAGGCTTAAATCAAGATGTTTACCAATGCAAGCATTGCGAGTTTTCCACCACGATTAAGTACAGGTTGAGACAACACGTAGAGGCGAAGCACATGCCAAAGATCTTCAAATGCGACAGTTGCGACGCCAAATTCGGCTCAATATTACTAGTGAAACTGCACTCTAACAGATATCACAAGTTCGAGAAGTGCAAAACTTGCAGCCAGGACGTTTTTCACAGACAGAAGGCGTTCCACAGAAAGGCATCGGTTTGCTCCAAATGCAAAAGCTGCCAAGGATCACTCAAGAAATGCGAAGAGTGTGGAACATCGTTCATCAGGAGAGTTGATTTGAATCGCCACGTGAAAAACGTTCACACCAAAGCCGCGATTCTTAGCTGTGCCCATTGCGACCATTCTTCGATTGAGAAGGGCCACATGTCGGAGCACATGCGAcgcaaacattttccaaagacGGTTAAGTGTGAAGAGTGCAACGAATTTTTTGCCTCTGAATCAATTCTCAAGGTTCACAAGTACTCGGCGCACTCATTCCTTCGCTGCACTGAGTGTGCGCAGGTTGTACGCCGCGGCAACATATTTCAACACCGGCGCGTCAAGACTTGTCGCTGCTGCAAGAGCAAACTGAAGTGCTCGGGTTTGTATCAATTGCATAGAAAAGATCACACCAAAGACGGGATTCTTATCTGCGGCCGTTCTTCAATTGACAAGAGCCACATGCAACTTCCAACGACGGTTAAGTGTGAATTGTGCGACAAATCGTTTGCCTCGGAACATTCTCTCAAGATTCACAAATACAGACAGCATAAATACGTTCGCTGCGCAGAATGTGCTCTGGAAGTAGTCAGCCGTAATATGTTTAGACACCGGACCGTCAAGACTTGCCGCTGCTGCGAGAGCGAGTTTAAGTGCCGTGGCCTTCTTGAAAAGCATAAGAAGACCTGCAAAAAAACCCTCTTTTGTTGCAAAGAGTGTGGAAAATCGTTCACCTCATCTCAGATGTTGTTACGCCACATTGAAGCTGCTGTCCACGCCAAAACCGGGATTTTTCACTGCGACCATTGCGACCATTCCACTCTTGAAAAAGATCAGATGCGGCGGCACATTCAACGCATACATTTTCGAGTGACGATCAAGTGTGATAAGTGTGACAAATTGTTTACTTCGGAATCTTCTCTCAAAACTCACAAATACATGCAGCATGAATACGTTCACTGCGCTGAGTGTGCTCAGGAAATAATTAACCGTCACATGTTTAAACACTCGACCGTTAAGGCTTGCCGCCGCTGCGAGTGCAAGTTGAAGTGCCGAGGTCTTCTTGAAAAGCATGAGAAGAGCTGCTGCGAAGAGAGTGCAAAATCGTCCAGCTCGAGTTTTCGCTGCGACCATTGCGACTATTCTACGCTTGACAAGAAATTCATGCGGCGGCACATGCAACGCAAACATTTACCAAAAACGATAAAGTGTGACAAGTGCGACAACATGTTCGCCTCGGAGCAATCTCTCAAGCGTCACAAACACGTGCGGCACCAATACGTACGCTGCGCAGAGTGTTCTCGGGAGATGCTCCGTCCATCCATGTATAAACATTGGACTGCCAAGACTTGCCGCCGCTGCGAGGGCAAGTTCAAGTGCTTAGGTTTGTACCTTTTGCATGGGAAGAGATGCAGACAAACCCTCTTTGCTAGCAAAGATTCCGCCGGAAAATCGTTCACCACATCTCAGGAGTTGGAGACAAAAGCTGCGATTCTCAGCTGCGACCATTCTTCAGTTGACAAGAGCAATCATCCTGCGAAGTCGAATATTCAGAGCGACAAATCATTTGCCTCTGAATATCTTCGCTATATTAATCCGTTAATTCGCTGCGCCGAGTGTGCGCAGGAAATCGACCGTCAAAAGATGAATACACACTTGCGCACGAAGATTTGCCGCCGCTGCAAACTCAGTTTCAAGTGCGTGGGTGTGTACCAATCGCATAGGAAGAGCTGCGAAGAATCCTTCATCTGCAAAGAGTGTGGAGAATCGTTCTCCTTGAGAAGGAAGTGGATTGTCCACATGAAGAAATTTCacatcaaattgaattatcgCTGCGACCATTGCCACTTTACTTCATTTCAGAAGGAAAACTTTCGGCTGCACTTGGTTCGCATGCATCTTCCAAAGACGATTAAGTGTGGAGAGTGCAACCTATTGTTTGCCTCGCGATGTGAACTCAAGCGTCACAAGCAAAAGAGCCACTCATACCTCAACTGCACTGAGTGTGCGCAGAAAATACGCCGCTATGGCATTCGTAAACACCAGCGCGTCAAGACCTGCCGCCGCTGCAAGAGCAAGTTCATGTGCACAGGACTTCTTGAACAACATAACGACAGTCAGATCTGCCAGAGTAATAACTTCCCTTGTGACAAGTGCCCAAAAATGTTCAAGCATAAGTATGGTTTGATTTATCATATTTCCAAGATGCACGTTGATGCATAA
Protein Sequence
MQPPTGKKGKPPIQKPLCRLCECPTSDGHVRASQVDRIKLRTWAMKVLDLRARDGNLPMLIGEDHLICYFCIWQAEFDDESGDDSLAWWPKNLDLAENAKILRENYSAGEVDQCWVQLEEVDLDKQTEEIPKKRKRRVGGVCIYCGNRYNQLMEHVKLMHKKAIKCGFYGCTTYFHTEKEKEQHMQEDIYAKHFKRRERRNVRCKFCKNVKFSRSLEVLRAHMNRFHPELVACTRVGCKEYFKSKSEMIQHIISSHKRAINQDHFKCMQCEYFTTVKCNLKKHVESKHMPKTFKCDSCDAKFGSKRIVNRHYQLCHTSTKCKSCGQEVVLGYKPIHGRPTVCSTCKRSFDCLGVFLFHKKMCCEENIHKCEECGKEFPKSWNLDCHVVRVHAKPVKAEYFRCEHCNYSTLHKSRVTEHMHWSHFPKTIKCDECDKLFATESFLKHHKRRSHQNVHCAECAQEVPRHTMSNHRLSKACHRCKGKFRCAGLYQLHWENCKQTVFTCKECGKMFTIHCELSRHVKRVHTKTVKTAVFLCAHCDHSSTDKRRMSDHMQCRHLPKKIKCKECNTRYASQYFLKRHINRWHEYVHCSECGQEVRRHAMFRHRRIKTCRYCERKAGCSGLLEQHEKNCRINSKQRGPDSIPFWDRFSSKDDSNLEMQSRRVKKGKSPIQKPLCRLCECPTSDGHVLASQVDRFKLRKWAMKVLNLTEEDENLPDVVEEDSLICYFCMWHAEFGDESGDEAVAWWPKNLDLEENARVLRENYSVGDAEQCWVQLEEIDFAKYEKKIPKKRKLVSGVCFYCGNSYNQLMEHVKLMHKEAIKCGIWGCATFFHTEEEKEQHMQQVSHEKRRKPCERKEIRCKFCDDVHLFASWKTWRCHMSQAHPEFSVACSHHGCKEIFKSKSELILHVNSWHKRHEQGLNQDVYQCKHCEFSTTIKYRLRQHVEAKHMPKIFKCDSCDAKFGSILLVKLHSNRYHKFEKCKTCSQDVFHRQKAFHRKASVCSKCKSCQGSLKKCEECGTSFIRRVDLNRHVKNVHTKAAILSCAHCDHSSIEKGHMSEHMRRKHFPKTVKCEECNEFFASESILKVHKYSAHSFLRCTECAQVVRRGNIFQHRRVKTCRCCKSKLKCSGLYQLHRKDHTKDGILICGRSSIDKSHMQLPTTVKCELCDKSFASEHSLKIHKYRQHKYVRCAECALEVVSRNMFRHRTVKTCRCCESEFKCRGLLEKHKKTCKKTLFCCKECGKSFTSSQMLLRHIEAAVHAKTGIFHCDHCDHSTLEKDQMRRHIQRIHFRVTIKCDKCDKLFTSESSLKTHKYMQHEYVHCAECAQEIINRHMFKHSTVKACRRCECKLKCRGLLEKHEKSCCEESAKSSSSSFRCDHCDYSTLDKKFMRRHMQRKHLPKTIKCDKCDNMFASEQSLKRHKHVRHQYVRCAECSREMLRPSMYKHWTAKTCRRCEGKFKCLGLYLLHGKRCRQTLFASKDSAGKSFTTSQELETKAAILSCDHSSVDKSNHPAKSNIQSDKSFASEYLRYINPLIRCAECAQEIDRQKMNTHLRTKICRRCKLSFKCVGVYQSHRKSCEESFICKECGESFSLRRKWIVHMKKFHIKLNYRCDHCHFTSFQKENFRLHLVRMHLPKTIKCGECNLLFASRCELKRHKQKSHSYLNCTECAQKIRRYGIRKHQRVKTCRRCKSKFMCTGLLEQHNDSQICQSNNFPCDKCPKMFKHKYGLIYHISKMHVDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-