Basic Information

Insect: Cloeon dipterum
Gene Symbol: -
Assembly: GCA_949628265.1
Location: OX451262.1:11921631-11926531[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00011 0.0078 16.7 1.4 1 23 254 276 254 276 0.97

2 14 1.8 1.3e+02 3.4 0.1 3 22 288 307 286 309 0.72

3 14 8.2 5.9e+02 1.3 0.5 2 23 319 341 318 341 0.85

4 14 0.035 2.5 8.8 0.6 1 23 377 400 377 400 0.92

5 14 4.6 3.3e+02 2.1 1.2 1 14 442 455 442 465 0.79

6 14 0.25 18 6.1 5.4 1 21 484 504 484 505 0.92

7 14 0.014 1 10.0 1.9 1 23 532 555 532 555 0.98

8 14 0.0096 0.69 10.5 1.8 1 21 630 650 630 651 0.93

9 14 0.57 41 5.0 0.4 3 23 679 702 674 702 0.85

10 14 0.053 3.8 8.2 2.2 1 23 714 737 714 737 0.96

11 14 0.00074 0.053 14.0 0.1 1 23 796 819 796 819 0.98

12 14 3.5e-05 0.0025 18.2 0.1 2 23 855 876 855 876 0.96

13 14 0.00028 0.02 15.4 0.1 1 23 916 938 916 938 0.97

14 14 1.1 78 4.1 0.3 3 23 965 988 963 988 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00011	0.0078	16.7	1.4	1	23	254	276	254	276	0.97
2	14	1.8	1.3e+02	3.4	0.1	3	22	288	307	286	309	0.72
3	14	8.2	5.9e+02	1.3	0.5	2	23	319	341	318	341	0.85
4	14	0.035	2.5	8.8	0.6	1	23	377	400	377	400	0.92
5	14	4.6	3.3e+02	2.1	1.2	1	14	442	455	442	465	0.79
6	14	0.25	18	6.1	5.4	1	21	484	504	484	505	0.92
7	14	0.014	1	10.0	1.9	1	23	532	555	532	555	0.98
8	14	0.0096	0.69	10.5	1.8	1	21	630	650	630	651	0.93
9	14	0.57	41	5.0	0.4	3	23	679	702	674	702	0.85
10	14	0.053	3.8	8.2	2.2	1	23	714	737	714	737	0.96
11	14	0.00074	0.053	14.0	0.1	1	23	796	819	796	819	0.98
12	14	3.5e-05	0.0025	18.2	0.1	2	23	855	876	855	876	0.96
13	14	0.00028	0.02	15.4	0.1	1	23	916	938	916	938	0.97
14	14	1.1	78	4.1	0.3	3	23	965	988	963	988	0.87

Sequence Information

Coding Sequence: ATGCGAATGTTGCGAAGTCTCAACACCTCGCCTCTTTTAAGCAAAAGTCCTCTTGGGGCTCTCGACCGCACCGAGACGGGCTACTTAATATCACTCGGTCAAGAATGGCGATGTTGCCACAAGGGGAGTGACGCCCAAGGACTTGGGAAAAAGGATCGCAGCTCAGGCGGAAGACCGCAGTCCGGCGTCATCCGCGGTGAAACTGCGCAGCTCAAACGCTCAAACGTCGCTACTCGCTTTCGCAGCTTGCCCGGaactcCGGATCTTTATAATTACGTTGAAGACGAATCATGCCAAGTTGACAGCTCTACTCTTGAAGTGCATCATGCTGCGCATGAATATCCCTTCATCAATGACTTCAGCGACAGCTCCTTTTACGAGAGACCAGatagtgaaattaaaatagtagAAGTCTGTGCCCTGAAGGATGTGCAGTGGATTGATGATCCTATAGAAAAGGAGGACTTTGAGTATGGTGTCGAGCCAGAGGTGAAAATCAAGGAAGAGCCGCCAGACCATGATGAATATGAGGAGTCGGAGTGGCCTGATGAATATTATTCACCCCTTATACCAGCTAACGACCACCATGTGTTCAAGATGGATCACCATCAAATTAAAGATGAGGCTGAAATACATGTGCCAAATTCTCCTACTGACGACTGCAAAATCAAACAAGAAATAGTTAAAGAGGAGGTAAAGGAAGAGCCATTGCCAGCTGCTCCCGCTCCCTTGCCGCTAGTCCAGCCTGCACCTAAAGTACATTGTTGTCCCATCTGTAGCAttgattttccttcaaatGATCTCCTCGTCAAGCATTTGCGTTCGCACGAAAACTTCTTCAAGCCAGCTGTCAACCTCGCGTGCCCAGACTGCAACCAAGAGTTCCTATCTGAACACATCCTCATCGAGCATATCATGGAGTACCATTTTTACACCAACGAGCGTGGAGAGGTCTCATGCGTCATCTGTGGCCAGCTGCAGAGCAGCGGTGCAGAACTGCGGAAACACATCTTCAACTGTCACTTCAACACAAATCCACACCCTACCCACTCAAGTGGCGTGGTTTCTGCTGAGGTTGCCAAGAAGAAAACTGCGTCAGTAGAGGATGAGGTGAAAAAGGTGACCACTTTCAGCTGCAAGCTCTGCAATGTTAAGCTAGCCTCCAAGGCAAAGCTGCAGCAGCATGTAGATCAGAAGCACAAGGGgaagaaaatagttttgaaaagagctaatgaaaaaaataatgccgcTGCTCAAGAGCTAACAGTAAGGAAGGAAACGGGACACAAGGGACTCAAGTTGCATTCAGAGAGGAACAATCGTTTTTACTGCAAGCTCTGTATGAAATCGTTTCCGAACGCCAGAGGCGCTGTTTGTCACATATCCAAGGTGCACAAGCAGCAGTACAATTTGGCCCCAAAGACTGCAGAGTCTACTATCAAAGGACCATTCCACTGCAAGAAGTGCAAAAAGGTTTTCGTTTACCTGAAGAGGTACAAATCACATGTGTGCGTTGCGCCTGCGAGCCAACCTGAGAAAAGTAGGCAGGTTCTCGCGCTCTCCAGCAATTATGTGAAGATGAGCAATGGCCTTTTCAAGTGTAAGATATGCATGAAAAAACTTAATTCGTACTCTGGCATGGCAAAGCATCTTCGGAAAAACCACCGTCAAGGCTGCAAATTAGAGGAAGGCAAAAATAATGTCCCAGAGCCCCAAGGATCGCACTCAAGGTCGGAAAAACGTACTGACTCTAGGGTGGAGCTCACATGCTCAAGGGAAGTGAGAGCTCTCAAAGAAACCCAGCCGTTCAAATCCTGCGATGAATATTCCCCTAATCTACCGCCAAGAGATAAGATTTACACGAGGATGAAGCGGAGACAGCAAATGTTTGCTTGCGAGGCTTGCAACCGGCACTTCATGACCAAAAGGCAACTGCGAATCCACCGGAAGAAGCTGTGTAAGGAGACGCGAGCTTCACTCACACCGATGGCCAGGTACTGCCTGCAGAGACGCGCTCACTTCCTTTGCAATGTGTGCTACAAGACTGATTGTGAATTCGAGTTCAAGTCAGAAAGTGAAGTCATTCTCCACCTCGACATCGATCACAACCTGACACTTCAGTCTGTCGTAGCTGTGCAATTCGTGTGCAAGTTCTGCAATCAATTGTACAAGTACGGTGCCTACCTGAAGACCCACATCAAGCAAAAGCATAAGGATGAGTTGGAGGAGAGCTTGAAGGTGCCAACAGATTCAAGGAGCGAGAAAGACAAAGTAATTGAAGCTGAGAAGATCGATAAACCAGAAAATGCAGCTGAAAAAGATCAACCAGAAAAGCCAGAACCTGAAGCTGTGGATGAATCCATTTCACCAGCGCCATTAAAGATGTACAAATGCCTGATTTGTGGGAAATTGCTGCCGCTGCAAATAGCCCTTCAGAGACATATGAAGATAAAGCATCCTCCTGCTTCAATAATAAAGACTGAGCCTGTAGAAGAAGAGGATAAGCCTGCAGATGACGTTCCTGAACCACCTTCTCCTTCTGCCATCACAGTGAATCGAAATGAGTGCGCAGTTTGTGGCAAAGTGTTCAAATTGTCCATTGCCCTCCAGAAGCATATGCTAAACCATTCAGAAAACCCTCCTTCATCGTCTCTGAAACCAACTGCACCAAGCGAGCCTGCTCCCGTGATTCTCACAATAAAGCAAGAATCTATTCCTTCTGGAAATCCCCCAGGGTCTGATTCCTTCAAGTGTCAGATATGCAGTAAAGCTTTCGCGGATGGAGAACAACTGGCAGCACACAGCAAAAACCATTTTGTGCCAAGAGTGGGCGCCGACGAGCAAAAGAAGGGCAGCGAGGGAAGCAAATCAGTCAAAAAAGGCCTTCTTGCTTGTGACCTATGTGATAAGGGACTCTCTTTCTTCTCTCAGGTAGCGCTTGATCAACATAAACGGAAATACCACAAACCTACGTAA
Protein Sequence: MRMLRSLNTSPLLSKSPLGALDRTETGYLISLGQEWRCCHKGSDAQGLGKKDRSSGGRPQSGVIRGETAQLKRSNVATRFRSLPGTPDLYNYVEDESCQVDSSTLEVHHAAHEYPFINDFSDSSFYERPDSEIKIVEVCALKDVQWIDDPIEKEDFEYGVEPEVKIKEEPPDHDEYEESEWPDEYYSPLIPANDHHVFKMDHHQIKDEAEIHVPNSPTDDCKIKQEIVKEEVKEEPLPAAPAPLPLVQPAPKVHCCPICSIDFPSNDLLVKHLRSHENFFKPAVNLACPDCNQEFLSEHILIEHIMEYHFYTNERGEVSCVICGQLQSSGAELRKHIFNCHFNTNPHPTHSSGVVSAEVAKKKTASVEDEVKKVTTFSCKLCNVKLASKAKLQQHVDQKHKGKKIVLKRANEKNNAAAQELTVRKETGHKGLKLHSERNNRFYCKLCMKSFPNARGAVCHISKVHKQQYNLAPKTAESTIKGPFHCKKCKKVFVYLKRYKSHVCVAPASQPEKSRQVLALSSNYVKMSNGLFKCKICMKKLNSYSGMAKHLRKNHRQGCKLEEGKNNVPEPQGSHSRSEKRTDSRVELTCSREVRALKETQPFKSCDEYSPNLPPRDKIYTRMKRRQQMFACEACNRHFMTKRQLRIHRKKLCKETRASLTPMARYCLQRRAHFLCNVCYKTDCEFEFKSESEVILHLDIDHNLTLQSVVAVQFVCKFCNQLYKYGAYLKTHIKQKHKDELEESLKVPTDSRSEKDKVIEAEKIDKPENAAEKDQPEKPEPEAVDESISPAPLKMYKCLICGKLLPLQIALQRHMKIKHPPASIIKTEPVEEEDKPADDVPEPPSPSAITVNRNECAVCGKVFKLSIALQKHMLNHSENPPSSSLKPTAPSEPAPVILTIKQESIPSGNPPGSDSFKCQICSKAFADGEQLAAHSKNHFVPRVGADEQKKGSEGSKSVKKGLLACDLCDKGLSFFSQVALDQHKRKYHKPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -