Cdip007031.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451260.1:33539568-33545139[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.37 27 5.5 0.1 3 22 555 574 553 577 0.87 2 12 0.97 69 4.2 1.8 1 23 584 607 584 607 0.96 3 12 0.0014 0.1 13.1 0.1 2 21 946 965 946 968 0.89 4 12 0.1 7.2 7.3 0.1 1 22 971 992 971 995 0.86 5 12 0.049 3.5 8.3 0.5 2 23 1005 1027 1004 1027 0.96 6 12 0.00036 0.026 15.0 0.8 1 23 1033 1055 1033 1055 0.97 7 12 0.05 3.6 8.3 0.2 1 23 1090 1113 1090 1113 0.94 8 12 0.00097 0.07 13.7 3.1 1 23 1122 1144 1122 1144 0.98 9 12 3.9e-05 0.0028 18.1 0.1 1 23 1154 1176 1154 1176 0.99 10 12 0.0031 0.23 12.1 0.2 1 23 1183 1205 1183 1205 0.96 11 12 1.9e-05 0.0014 19.1 0.1 1 23 1211 1233 1211 1233 0.97 12 12 2.5e-06 0.00018 21.8 2.1 1 23 1239 1262 1239 1262 0.98
Sequence Information
- Coding Sequence
- ATGGACGAGGAATATTCTGATTGCCGAACGTGCACCATGCAGTTGAAGATCTCGAACATGGAGTCGGTGTTCAGGTCTTCAAAATTAGCTGAAATGTACAGGACGGTGTTCGCCGTGAGCGTGGTGCCGGACAAACGTCTGCCTGAGTTCATCTGCGTACCTTGCCTGACCCAAATGAATGTTGCATATGAATTCATCTCCAAGGCGTTGAAAGTGCAACAGACGTACTTGAGTGAAGCTCAGCCGAAGGAAGATAAGAATGCAGCAGAAGtgccagaaaatattttagccgaCGACAAATCTTCCAAAGACTCGGAGCCGGCTACTTCCCCCGCGCCGAGACCACAGCTGAAACTGAAGCCGCTGTCGGCGCTGATGAAACCAAGCACCCAGAACTCTGTGCAGACTAATCCGCTCGTTAAGGACATGAGCTACATGTTTTGCGCAAAGTGCAATACCAGGTTTTTATCCAACACCATTGCATTTCGGCAGCATACGAAGCTATGCGGACAGAGTGCCAAACCCAACCAGCTGTTTGTCAAGTTTCACAGCAATGGGGTAGAGAAGCACATTCTAATCAATCAGAACAGGGCGTTACCGATGCCAAAAACCTTGTCAAGTACCGTGAGGTTGGTGTCTGGGAGGTCGCCTTTCGCCACACCGAAACAGAGTTCTCAGCAGCAGACAGCATCCTCAACCGCAGCTCCACTCCAGATGTGCTACCCCGACCCAAACTCACCCTCAGCTTCCACCATGCAGAGTCCGCCCATCCAATCAGTGCCTTCACCCTCCCCGATAGCCACCTCTGCTGTTTTCTCCTCTGCTCCCAGCTCCTCAACCTCTCACACCACCACTTCTTACCTCTTGACTCCCAACACCTCGAGTGCAGCTGCTCCCCTCCTCGTTACTCCATCGGTCGTCGCACCCACCATACCCTGCCCCCCGGCCCCCCAGCCATCAACACTGGTATGGACACCTACCCCATCAGCTACCCCCCGTGTGCCAGTTTCGGTGGTTAGTCCTCTCCGTGCCCCGGCGGTCGCCGCATCAATTTCCACCGTCCGACCACCTTCCGCCACCGTCCCCTCTCAAGCCCCTCCGGCCAATATGAACGACCAGACACTGCCCCAGTCAACGTCCTTGGTGCAGCAGAGGTGGTCTGTCACCCACTCGCCCATCGCTTCCCCTTCTAATGATTCCTCTACCCCGCCACCTGCTCCTCAAGATTCCCCCTCGCCACCTCTACCTGATCCTCAAGGTCCTTCCTCTTCTCCTCCACCTGTTATTCAAGATGTCCGCTCTCTTCAGTTGGATGAGGACGAGGTTGAGGTGCTCAGAGAAGTGCACCGGATAGATGAGGACGAGATTGAGGTGCTCAGCGATGTGCTCCCGTCGCGCCAGGCGATGAAACGGAACGCAAACGGCAACTTCGTAAGCAACGCGGTGAACGTGCTCGCGCTGCGTTCTCTCTGGGTCAACCCCGACCTGACGCACTGCAGCCTGTTTGAGAAAAGACTGAAGACGGAGAGCCTGCTGCGAAGTGCCATGAATCTCCTGTGCGAATGCTCTGAGTGCCGGATTGTTTTTCTCAGTGAGACCGAGTACCTCGACCACTTTGTCTACAACGACGAACTGAAGTCTTACGTGCACTCAGCGTGGGCCTGCCGCGCCTGCAAGGCCAACTTCAGTTCGAAGCAGCTACTCGAGGAGCACTACCTGATCGGGCTGCACGGCAATTTGCGCAATCAGTACACGTGCAGCTTGTGCCCCATTTTCACCAACTTCAACACATGCGTGATGCGTCACGTACTCAAGATCCACTCGCACTGTCCGCACTGCTACACCAATCTGCAGTTGGCCCGTAGCGTCGCTCTGCGGGCCGGCCAAGGGCCCCTGAGGACGAGGAACTGCCTGAATTGCGGCCTGCTCACCAACCGCAGCTCCGAGGTCGCCCTCATGAAGGTGTTCGAGGTGCCGCAGCGTGAAAAACGGATAATTtgcaactgctgctgcttggcGTTCACTACCACCGAGGAACTGATCTCTCACTTTGGCAAGGAACACCCTAACATCGAGGTAGATGGCTTGCTGCACTGCGTCGTGGCCTGCGGCAAAAAAGTCTGCGCCGAGACAGACTTGTACAAGAAGCGAGAGGCCGGCCTCTTGAACAAGATCAAACTCGAGCCAGAAGACGAAGTGGAAAAACTAGAAATCGATTCAAAAGTCAAATGTCTGAAAAGTAGAGTTACAAAAGTTGCCTCGATGGAAGAAGAGTCTGGCTCGAATCTGTCGGACCTCTGCCGGCTGTGTGGCGCCGCGAGCACGGAGCGAAAAGACCTGCGGAGCGATGAGCTGGCGGCCCAGCTGCAGAACCTGCGCTTCGAGCCGACATGGGATGACGGTCTGCCGTGCGGTGCGTGTCCGGCGTGCGTGCTGAAGCTGGCCGAGGTGCACGATTTCGTGGCGGCCATGAAGCGCACCGACGACCTCCTACGCGCCCTGCTGGCCACCTCCAAGGAGCCGCCGGACTTGTCCTTCCTGGACGCGGGGGACACGCAGTCGCTGTGCCTCGAAGAGCCGGAGCAAGAGCAGCCAGAGTCGACCAAGAAGCGGAAGTCCTCCTCCTGTCCTGGCAGGGAGAGCAAAAAGCCAAAGCGGGAGTCGTCGATCTGCGAGAAGCTGGCCGAGATGAGCAGCAAAATGAAGGAGACGGAGGAGTTGAACGCCAAGTTGAACCTTCCAGGCTCATCCGGCTGCCTGCTGGAGATGATCGGCAAGAACCAGAGCAAGCCGCGCGGCCGCATCCAGCTGGACAGCTCGGAGACGTCGATACGTGTGTGCGAGCAGTGCAACATCATGTTCTCGCGGCCGGAGCTGCTCGAGCAGCACCGCGGCGCCGAGCACCTGGTCTTCCAGTGTCAGGTGTGCGGCGCAAACTTCAACACGGCCCTCATCCTGGCCAGCCACCTCAAGCGCAACGTGCACAGGGTGGCGCTCAAGGACACCAAGTGGACCTGCGCCGAGTGCTTCATGGTGTGCAAGGACAAGGGCTCAATGCTCGAGCATGTCAGGTCGGTGCACACCAACGAACGGCCCTTCCCTTGCCACCTTTGCGAACGCAGGTTCGCCGTCAAGAGGGCCCTCACCCTGCACGTCAGGGAGCACAAGAAGGACTGGTCGCACGTCTGCCGCTTCTGCGGCAAGGGCTTCCTCATCAAGGAGTACTGCGAGATCCACGTCAGAAGGTATCACACGAACGAGCGGCCGTTCCAGTGCGACCGCTGCGAGGCAAAGTACGCGTCCAAGCTGCAGCTGAGCGAGCACATCATCGCAAAGCACGAGGGCGGCCGGCCGGAACAGATTTTCACGTGCCAGGTGTGCAAGAAGAAGTTCAAAGGCTCGACCGGCTTCAAGTACCACGTGCAGACGCACGACGTGCCGCTGGACGAGCGCAAGAAGTTCAAGTGCGAGCTGTGCGACGCGGCGTTCATCCGCAAGCCGGCGCTGATCAAGCACGTGAAGCGCCACAAGGGGGAGCAGGAGATGTTCGAGTGCCGGTTGTGCGGCAAGAAACTGGCCACCGCGCACGGCCTCGAACTGCACCTGGTCGTCCACTCCGGGGAGAAGAACCACGTGTGCGAGTTCTGCGGCAAggcgttcgccgccgccggcacCCTCAAGGTGCACATCCGCTCGCACACCGGCGAGAAGCCCTACCAATGCAAGTTTTGCCCCAAGAAGTTCTCGCAGCGCTCCTCAATCAAGGTGCACATGCGCAACGTGCACCAGTATGAGGACACCGTCGACAAACTCAACATGTATTTGTTGACCTGA
- Protein Sequence
- MDEEYSDCRTCTMQLKISNMESVFRSSKLAEMYRTVFAVSVVPDKRLPEFICVPCLTQMNVAYEFISKALKVQQTYLSEAQPKEDKNAAEVPENILADDKSSKDSEPATSPAPRPQLKLKPLSALMKPSTQNSVQTNPLVKDMSYMFCAKCNTRFLSNTIAFRQHTKLCGQSAKPNQLFVKFHSNGVEKHILINQNRALPMPKTLSSTVRLVSGRSPFATPKQSSQQQTASSTAAPLQMCYPDPNSPSASTMQSPPIQSVPSPSPIATSAVFSSAPSSSTSHTTTSYLLTPNTSSAAAPLLVTPSVVAPTIPCPPAPQPSTLVWTPTPSATPRVPVSVVSPLRAPAVAASISTVRPPSATVPSQAPPANMNDQTLPQSTSLVQQRWSVTHSPIASPSNDSSTPPPAPQDSPSPPLPDPQGPSSSPPPVIQDVRSLQLDEDEVEVLREVHRIDEDEIEVLSDVLPSRQAMKRNANGNFVSNAVNVLALRSLWVNPDLTHCSLFEKRLKTESLLRSAMNLLCECSECRIVFLSETEYLDHFVYNDELKSYVHSAWACRACKANFSSKQLLEEHYLIGLHGNLRNQYTCSLCPIFTNFNTCVMRHVLKIHSHCPHCYTNLQLARSVALRAGQGPLRTRNCLNCGLLTNRSSEVALMKVFEVPQREKRIICNCCCLAFTTTEELISHFGKEHPNIEVDGLLHCVVACGKKVCAETDLYKKREAGLLNKIKLEPEDEVEKLEIDSKVKCLKSRVTKVASMEEESGSNLSDLCRLCGAASTERKDLRSDELAAQLQNLRFEPTWDDGLPCGACPACVLKLAEVHDFVAAMKRTDDLLRALLATSKEPPDLSFLDAGDTQSLCLEEPEQEQPESTKKRKSSSCPGRESKKPKRESSICEKLAEMSSKMKETEELNAKLNLPGSSGCLLEMIGKNQSKPRGRIQLDSSETSIRVCEQCNIMFSRPELLEQHRGAEHLVFQCQVCGANFNTALILASHLKRNVHRVALKDTKWTCAECFMVCKDKGSMLEHVRSVHTNERPFPCHLCERRFAVKRALTLHVREHKKDWSHVCRFCGKGFLIKEYCEIHVRRYHTNERPFQCDRCEAKYASKLQLSEHIIAKHEGGRPEQIFTCQVCKKKFKGSTGFKYHVQTHDVPLDERKKFKCELCDAAFIRKPALIKHVKRHKGEQEMFECRLCGKKLATAHGLELHLVVHSGEKNHVCEFCGKAFAAAGTLKVHIRSHTGEKPYQCKFCPKKFSQRSSIKVHMRNVHQYEDTVDKLNMYLLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -