Cdip011301.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cloeon dipterum
Gene Symbol
-
Assembly
GCA_949628265.1
Location
OX451262.1:3139868-3143565[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.075 5.4 7.7 2.0 1 20 521 540 521 544 0.92
2 12 0.062 4.4 8.0 2.5 1 23 547 570 547 570 0.92
3 12 3.5 2.5e+02 2.5 0.0 2 20 588 606 587 608 0.92
4 12 0.00011 0.008 16.6 3.2 1 23 630 652 630 652 0.98
5 12 6.6e-07 4.7e-05 23.6 2.6 1 23 658 680 658 680 0.99
6 12 0.00075 0.054 14.0 0.3 2 23 687 708 687 708 0.95
7 12 0.011 0.79 10.4 0.7 2 23 756 777 755 777 0.97
8 12 0.00082 0.059 13.9 0.2 1 23 788 811 788 811 0.93
9 12 2e-05 0.0015 19.0 0.7 1 23 817 839 817 839 0.98
10 12 0.0002 0.015 15.8 1.4 2 23 845 867 844 867 0.97
11 12 2.7e-06 0.0002 21.7 2.0 1 23 872 894 872 894 0.98
12 12 0.0052 0.37 11.4 1.2 1 23 900 922 900 922 0.95

Sequence Information

Coding Sequence
ATGGGGAGAAAACTACAGTGCGCTGTTGTGACCTGTCCCAATCACACCGTTGCAAATGTAGACAAGAACGCCATCAAGCTGCACAAATTTCCAACCGATAACACACTCCGCAAGAAGTGGTGTCTGCTTCTCGGCGTCAAATACGACTCTCTGAATCCAAATTTCCCTCACAGACATTTAGTTTGTCATGAACACTTTGACATGAAAACCTTTCACAGCCGAACTTGCCAACTACTCAACTCGTACGAATCCACAGCATCGCAAAATACTTGCAGCAGATTGTGCTCATCAATCCCAAAAGGAATGCTGCCAACCAGAAACTTGCCTTCCTCCATTGTGTCAGACCTGGCAGCCGATACATCAGATTCTGCCGCGGACCTTAAACAGTTGCTCATCGACAAATTATCCTTGGCGTCCACTTCAAATGGCACTCAAAACTTGATCCTCCCTTCAAATGATGCTGTCCTCCCATCAAGCTCAAGCGTTGTTCAACCTGCTGCTGTTACCAAAACAATGCCAAGAATACTCAAACCAGGGACATCTACTCCTGCGTCTACAAGAACACGAAGTGCAACCTTAGCTGCAGCTAGAAGCTCGCCAACAGTTTCAGTCAAAATCGAGCCTACAACTTTGGAATCTTATCCCGTAGAAGTTTTTGATGCCCAGAGACACCAACCAATGCAAGTCTTTGTCTCTGGGGCACCTCAAGTAAACATAGGAAACTCTCAAGCGACAGTTGCAAAGCCAAACATCGTCTGCAAAAAGCCACCAAATCCATCACCAGCACCTCAGCAGCCAATTGCGAACACTAAAATCTTGCTTAATCCTAAACTCATCCTGCCAAAAATGAGGGGGACTCTTGCAGTGCAGGCAAGACCCACAGTAGTTCCCCTTCCTGGCAACCTGCTGGCTGACATGATGGATGGAATGAACAGTGATCCGGATGCCCAAATCGAACTTgTGTGGAGCGAAAATCCATTTCTTGCTCCTTTGTTGACTGATGTGAACACCATGTGTCGCATGTGTGCTAAATCGAACCTGTTGCTCACGAAAATTGTTGATCAAGATTGTGACCTTGCCAAAATGGTGAACGAGTGCCTTCCCTTCCAGGTCAACAAGAATGATGGATTTTCTCAAATGATATGTTTGCCTTGCCGTCGGTCTGTGATTCGCACCCACAAGTTCTATGTGCAGTGCAGAACAGCCAATGCCCTCCAGAGAAATATTAACGCACAGAACAATCTCAGCAGGGCTGCGTTACGTACAGTGGATCCCATTCCAAAACCAACTTTACCTGTGAAAATTGTATCCAGCACTGCAGAGGTCAGACCGGCCCCACCTGTGCTTgtaaaagcaaaagaaattgTGCTTCAGCGTGACATTCCGAAAGCTGCCGCACCAAGTACTATCATAGCAGCTCCTAAAAGAACATCTGAAACACCTCGAGTCGTGACTGACAAGAGAGCCAAGCAAGAAAAATACCCCAAAATCAAGCCTGAGACCCCTTTGTACTCTATCTACAAGTTCCCTGATCCACTGAACCTGATGCAGGCGCCGGATTATGACTGCAAACGTTGCCCCACCTCGTACTGCTCAGTTATGTCGCTAATCAGGCACTACTGGACAACCCACCAGCAGCACTATTGCAAGGAGTGCAACAGTGTGTTTGATACCCGAAAGGACTTTGAGGGTCATCACATAGAGATACACTTCAAGGTGCCTCCCATTTACAACTTCCACTATGAAGAGTTGGGCAGCAAAACGTGTTCATTCTGTGGAATCGACTTAGGCAGCGTTCCGGAACTACGAAGGCACTACGTCGTTGAGGGAAGCTGTCCAGCTCTGATGGAGGAATTAATCCTGAGAGAAAGGAAGTTCAAGTACAAATTCACTTGCAGCTTTTGTGGAATgatgCTGAAATCGAGGCACACCTTGACCCGGCACATTTTAACTCACGTCAACGTTTCTGACTATCGGTGTAAAGAATGCGACAAGATATTTACCCGCAAGGACAGACTAAAAGAGCACATGTACACCCACTCTACGGAACACAACGAGCAGTGCGATGTGTGCGGGGCCACTTTCAAATCAAGGACTGGGCTTTCGCAGCACAAGGTGGTGCACGAGGGCCGCTGGAACAACCGCTGCACTTGCTGCTCGCAAACATTCCGCTTCGTCAAGGACGCTGAAGCCCATTTCAAGACGCATTCGAATGCTGAAAAGTCTAAGGTGAACTACAATCCGTTCACCAAGGTTCACGAGCTTGAGTGTCCGTTCTGCCAGCGCCCCTTCAAGTGGGAATACTACTACAAACTTCACCTGAAGACCCACGACCCCAACTCGAAGCACTTCAAGTCTGGATTCCTGTGTGATCAGTGTGGCCTGAATTTCAGTAACAGACCAGCCTTGCGAATGCACGTCAGCAAAGTGCATGGCACTCCCATCATTTACGAGTGCAACCTTTGCGGAAGGAAATACGAGAGCAAGCAGGGCCTCAAGCTGCACATGGAGAAACACATGGGCGAGATGAAGCAGTGCAAGGAGTGCAAGCAGACGTTCAACGGCATGACGAGTCTGCGGGCCCACCAGCGCAGCGTGCACATTGACAAAAACTTTGAGTGCAACTATTGCAGCAAGACTTTCAAGCTGAAAAGGCAGCTTGTCACACATATCAGAGTGCACACGGATGAGCGACCGTTTCAGTGCAGGCACTGTCCGTCTGCGTTCAAACAGTGGGGAGATCGCAGGAAACACGAAGCCCTGCATTTGGACGGTAAATGA
Protein Sequence
MGRKLQCAVVTCPNHTVANVDKNAIKLHKFPTDNTLRKKWCLLLGVKYDSLNPNFPHRHLVCHEHFDMKTFHSRTCQLLNSYESTASQNTCSRLCSSIPKGMLPTRNLPSSIVSDLAADTSDSAADLKQLLIDKLSLASTSNGTQNLILPSNDAVLPSSSSVVQPAAVTKTMPRILKPGTSTPASTRTRSATLAAARSSPTVSVKIEPTTLESYPVEVFDAQRHQPMQVFVSGAPQVNIGNSQATVAKPNIVCKKPPNPSPAPQQPIANTKILLNPKLILPKMRGTLAVQARPTVVPLPGNLLADMMDGMNSDPDAQIELVWSENPFLAPLLTDVNTMCRMCAKSNLLLTKIVDQDCDLAKMVNECLPFQVNKNDGFSQMICLPCRRSVIRTHKFYVQCRTANALQRNINAQNNLSRAALRTVDPIPKPTLPVKIVSSTAEVRPAPPVLVKAKEIVLQRDIPKAAAPSTIIAAPKRTSETPRVVTDKRAKQEKYPKIKPETPLYSIYKFPDPLNLMQAPDYDCKRCPTSYCSVMSLIRHYWTTHQQHYCKECNSVFDTRKDFEGHHIEIHFKVPPIYNFHYEELGSKTCSFCGIDLGSVPELRRHYVVEGSCPALMEELILRERKFKYKFTCSFCGMMLKSRHTLTRHILTHVNVSDYRCKECDKIFTRKDRLKEHMYTHSTEHNEQCDVCGATFKSRTGLSQHKVVHEGRWNNRCTCCSQTFRFVKDAEAHFKTHSNAEKSKVNYNPFTKVHELECPFCQRPFKWEYYYKLHLKTHDPNSKHFKSGFLCDQCGLNFSNRPALRMHVSKVHGTPIIYECNLCGRKYESKQGLKLHMEKHMGEMKQCKECKQTFNGMTSLRAHQRSVHIDKNFECNYCSKTFKLKRQLVTHIRVHTDERPFQCRHCPSAFKQWGDRRKHEALHLDGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00344287;
90% Identity
iTF_00344287;
80% Identity
iTF_00344287;