Basic Information

Insect: Cloeon dipterum
Gene Symbol: -
Assembly: GCA_949628265.1
Location: OX451261.1:18669695-18673328[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 6.8 4.9e+02 1.6 0.0 7 21 126 140 120 141 0.87

2 14 3.8e-05 0.0027 18.1 0.1 1 21 304 324 304 325 0.92

3 14 4e-07 2.9e-05 24.3 0.1 1 21 337 357 337 358 0.96

4 14 3.2e-05 0.0023 18.3 0.6 1 23 393 415 393 415 0.96

5 14 4.5e-07 3.2e-05 24.2 1.5 1 23 420 442 420 442 0.98

6 14 0.061 4.4 8.0 3.9 2 23 453 474 452 474 0.97

7 14 0.14 10 6.8 2.3 1 19 482 502 482 507 0.95

8 14 0.04 2.8 8.6 0.3 1 23 533 556 533 556 0.93

9 14 3.2 2.3e+02 2.6 5.1 1 20 567 586 567 589 0.94

10 14 0.016 1.2 9.8 0.4 1 23 595 618 595 618 0.95

11 14 0.0021 0.15 12.6 0.4 1 20 622 641 622 644 0.93

12 14 1.2e-06 9e-05 22.8 1.3 1 23 650 672 650 672 0.98

13 14 0.012 0.86 10.2 2.7 1 23 678 700 678 700 0.97

14 14 0.13 9.5 7.0 1.0 1 23 706 729 706 729 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	6.8	4.9e+02	1.6	0.0	7	21	126	140	120	141	0.87
2	14	3.8e-05	0.0027	18.1	0.1	1	21	304	324	304	325	0.92
3	14	4e-07	2.9e-05	24.3	0.1	1	21	337	357	337	358	0.96
4	14	3.2e-05	0.0023	18.3	0.6	1	23	393	415	393	415	0.96
5	14	4.5e-07	3.2e-05	24.2	1.5	1	23	420	442	420	442	0.98
6	14	0.061	4.4	8.0	3.9	2	23	453	474	452	474	0.97
7	14	0.14	10	6.8	2.3	1	19	482	502	482	507	0.95
8	14	0.04	2.8	8.6	0.3	1	23	533	556	533	556	0.93
9	14	3.2	2.3e+02	2.6	5.1	1	20	567	586	567	589	0.94
10	14	0.016	1.2	9.8	0.4	1	23	595	618	595	618	0.95
11	14	0.0021	0.15	12.6	0.4	1	20	622	641	622	644	0.93
12	14	1.2e-06	9e-05	22.8	1.3	1	23	650	672	650	672	0.98
13	14	0.012	0.86	10.2	2.7	1	23	678	700	678	700	0.97
14	14	0.13	9.5	7.0	1.0	1	23	706	729	706	729	0.94

Sequence Information

Coding Sequence: ATGAATCATGACTTGAACAGTGTTTGCCGCACTTGCGCCGGCTTCAGCACCAACCTTTTGCCTATTTTCGGTCATGATGGCATGGAAAAGAAACTCGcagaaaaaatcaaccaaaacTTGCCAATCTCAGTTTATGAAAACGATTTGCTGcccataaaaatttgttcgaGGTGCATATTTAGTCTTGAAGCCAGTattgaattcaaaaatatcTGCCAAAAAGCTGAAGAAAccctgaaaaacattttagcaGAGCAGCAGCCACCTGATGTTCTCACTGAAATTCCTATGCTGCCAGATGTTGAGATGGCCGACACAACTGTCAGTAACAACCAaTGGATCAAACAAGAAAACGTTCCAATATGCAATGCTGCAGGCTTAAGCTTCACGGACAACAACACCTTCACCATTCACACCCAGCAATTAGAAACACCGAAAACTGAGTTAATATTGCCAGATATTGCCCCAGTCGAGACTGTGTTCTACAATGAGGTGGAGATTACCAAGAAAAAGCGCACGCGGCCTATCATGCCGAAAATAATGCCGATCCCCATCGCCAACCTCATGGCGCCGTCGATGACCATCATAACGACTGGCGGGCCAAACATGACAAAGCAACAACTTCTACCGGTCATCAAACTTTCCACGTCGCAGAGGCAGAAGTCGGCCATGGAGCAGTTGATGACGGATAAAATTCCTGTGAAGAACGTGAGACAGATTCTGCAGAGGAGGCAGCTGAATATACCAAGCAGCCTGATCGACAGGACTGAATTAGGAAACAAGTCGATTGTGTTTGGCAGCGAAGAAGAGGGCATGAACGTTGAAGTTTTTATCCCGGACGCGCCTTTGGGGAGCACCGACGACCCTATGGAGACCGTGCCCATATGCGTCGACGTCACGGAACACCCGTTCCTCTGCGAAAACTGCGGCAAGGGCTTCAGGAACAAAGCACTCCTGAAGGACCACATCATCCGCAAGTACATCGCCACCAACCCGGAGGAATTTGAGTTCCCGTGCGAGGAGTGCGGAAAGACGTTCCCGACTAGTTATAGCCTGAAGGCCCACTTGCGCAATAAGAGGGCGCAGACTGTCAAGGTGCAGTGCGAGATCTGCTCGCAGGAGGTCTTGAAGAAAAACTGGCCCACGCATTTCGCGCGGCACAACCAAGACGAGCGCTTCAAGTGCTTAATTTGTAATCAGACATTCGCTAGCAATGCTCAACTGAAGCAGCACTCAAGCGTGCACTCCTCTTCCAAATTCCCATGCGAGTTTTGCGGCACCACCTTTAACCGAAAGTCGAACCTAACTCTGCACAGGAAAATCCACACAGAGCCAGAAGCACTGGCGCACCAAGTTAAATGCGATATTTGCAACTACCAGAGTAACGATCGCTACTACATGATGCACCATCACAAGGTCCACTTCAGCGCCACCCTCAATGCGTACACTTGCCCAGTTTTGACTTGCAACTTTACCTTCCAAAATTTCGATCAATTGAGGTTACACTGCGCTCAGTCGCACTGCCGCGAGGAGCTGAGTTTGTACACGAAGCGCAAGAAAAGAACGCAGCGCGTATCCAAAGTGCTGATCGCGCCGTACCTGTGCAAACTCTGCTCATCGGTTTTCAACAGGCCGATTGAGTACAGCTCGCACATTAGTCAGGAACACGGCGTGCAACTCATGGCCGGGCATGCCATCTTCACGTGCAACCACTGCAAGGACTGCTACGGTTCGCTGGTGGACCTAAACGAGCACCTTGAGTGCCACATTGAAGCTCACAAATATCCGTGCTCCAAGTGCACCGAGACATTCGCAGTGTTCAACAACAGAAACCAACATTTGGCATCGGTTCACAGTACCAAGTTTGAGTGTGAAATCTGCAATATGTCTTTCATGACTGTGTTCAAACTAAAGGAGCACATGCCTTCCCACTCAGACATCAAACCGTTCACATGCAAGATCTGCGGAAAGGGCTTCAAGCGGAAACGCACACTGGGAGAGCACCAGAAAGTGCATTCGGACGTGAAAAAGTTTGAGTGCGAGCATTGCCATGCTAAGTTCCGGTGGAAAGGAGACTTGGTCAGGCACGCGACCCGCCACACTGGAATCAACTTGTACCACTGCAGTGAGTGCGAGTTTTCGAGTAACAAGAGAAAAGAGGTGGAGGCCCATATTTCCGAAAACCATTCCGTCATCGTTGACATGCAAGTTTGA
Protein Sequence: MNHDLNSVCRTCAGFSTNLLPIFGHDGMEKKLAEKINQNLPISVYENDLLPIKICSRCIFSLEASIEFKNICQKAEETLKNILAEQQPPDVLTEIPMLPDVEMADTTVSNNQWIKQENVPICNAAGLSFTDNNTFTIHTQQLETPKTELILPDIAPVETVFYNEVEITKKKRTRPIMPKIMPIPIANLMAPSMTIITTGGPNMTKQQLLPVIKLSTSQRQKSAMEQLMTDKIPVKNVRQILQRRQLNIPSSLIDRTELGNKSIVFGSEEEGMNVEVFIPDAPLGSTDDPMETVPICVDVTEHPFLCENCGKGFRNKALLKDHIIRKYIATNPEEFEFPCEECGKTFPTSYSLKAHLRNKRAQTVKVQCEICSQEVLKKNWPTHFARHNQDERFKCLICNQTFASNAQLKQHSSVHSSSKFPCEFCGTTFNRKSNLTLHRKIHTEPEALAHQVKCDICNYQSNDRYYMMHHHKVHFSATLNAYTCPVLTCNFTFQNFDQLRLHCAQSHCREELSLYTKRKKRTQRVSKVLIAPYLCKLCSSVFNRPIEYSSHISQEHGVQLMAGHAIFTCNHCKDCYGSLVDLNEHLECHIEAHKYPCSKCTETFAVFNNRNQHLASVHSTKFECEICNMSFMTVFKLKEHMPSHSDIKPFTCKICGKGFKRKRTLGEHQKVHSDVKKFECEHCHAKFRWKGDLVRHATRHTGINLYHCSECEFSSNKRKEVEAHISENHSVIVDMQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -