Cdip011225.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451262.1:2191155-2193018[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.5e-06 0.00018 21.8 1.3 1 23 2 25 2 25 0.95 2 15 4.8 3.5e+02 2.1 0.1 5 23 50 69 48 69 0.86 3 15 0.02 1.4 9.5 0.2 2 23 76 97 75 97 0.93 4 15 0.0035 0.25 11.9 4.0 1 23 107 132 107 132 0.95 5 15 2.1e-05 0.0015 18.9 0.9 1 23 141 164 141 164 0.96 6 15 4.4e-06 0.00031 21.1 0.3 2 23 187 208 186 208 0.96 7 15 3.5 2.5e+02 2.5 1.1 3 23 223 244 221 244 0.94 8 15 0.00047 0.034 14.7 0.7 1 23 253 275 253 275 0.97 9 15 0.011 0.76 10.4 5.5 1 23 280 303 280 303 0.96 10 15 0.0027 0.2 12.3 0.6 1 23 311 333 311 333 0.97 11 15 0.01 0.74 10.4 5.1 1 23 339 361 339 361 0.99 12 15 4.1 3e+02 2.3 1.4 2 10 367 375 366 375 0.91 13 15 8.5e-05 0.0061 17.0 2.5 1 23 391 413 391 413 0.95 14 15 0.00082 0.059 13.9 0.3 1 21 419 439 419 442 0.89 15 15 0.00016 0.012 16.1 2.4 1 23 447 470 447 470 0.96
Sequence Information
- Coding Sequence
- ATGTACGAATGCTCTTTCTGTGACTTTGTCTTCACTCAGAAGGCGAATTTTCAAAGACACCTGAAGGATGCACACAACGCTGACCCACATGCTACGAATAAACTGGAGGTTATGTGCAGCCTCGACGGACACTTGAGAAAGGAACTGGTTTGTCGCATCTGCCTCATCAGAACAACAGACATGCAGGCCCACATGATCGCAAATCActcgcaaaatttaaatgtcaagTGTGGACTTTGCAACAAATTGTTCACCGGAATGGCCACCTTCCAAGCCCACATGCCGACTCACGCAAATCGAACCGAGGTGCCTGCCAAGTTTCCCTGCGACTTCCAAGATTGCAACAAGCGTTTTTTCGAGAAAGAACACTTGATGCTGCACTTGAAGCACGAGCACAAAATCAAAGACAAAAGGCTGATATTTGACTGCAGCTTCTGCGACCAGGTTTACGCCCGCAAGACGAATTTTGTCGACCATATGAGAATTAAGCATTACGCCATGGATTGCGTGGTTGCCATCTCACCCGCGAAAATGCTCAGCTCGCTCGACGGCCACTtgaagtgcaatttttgcccTGAGAAATTCTCCAGCAGAGCGAACCTGGAAACGCACATCATGTGGCACCTGCGTTGCATGAGACAAAGCAACGGGATATTTATATTCGGATGCGTTTTGTGCCCTTACAAGAGCAAGAAATACCGCACAACTGAAAGGCACTATCGTGATTCGCACAAAATTGATTGGCCCTTTTTCCTGTTCGAATGCGATTATTGCCCCATGGGCTTTATTCACGAGAGCAAGTTTGTGCTTCACATGGATCAACACaatggtaaaaaatacaattgcGACCATTGTGACAAATCTTTTAAATGCAAAGACGGCATTTATAGACATATATTAAGAAAGCACGTTACTGAGAATCAATGCAGATTTGTTTGCGAAACGTGCGGTGCAAGGTATTACGAGAAGTCTAAATTTGAAGACCATACAGCACGTCACAGCAATGACAGACCTTATAAATGCTTGCACTGCGATTACACCACTTTCAGAGAAAAGTATCTGGTATTGCACAAGAAAACCCATCTCGCAAAAAGATCCAAATGCAACATTTGCAAGAAGTATTTTCTCAACCTGCCGGGGCACGTTTCCGCGAGTCACAATAAACGAGAGTTCCCTTGCCAACTGTGCGGGAAAACATTCAAAAGAAAGGCCCAATGCCAACGCCACTTGGACGCTCACTTgggcaacaattattttccgtGTGACATTTGCGGCAAAGTGTACTCTGCTGCAGAATCAGTGAAAAAACACAAGTTTGACAAACATGGCATCATGCCGTATGAGTGCAAAACTTGCAAGAAGGGATTTGCTAAACACATTGAGCTGAAAAAGCACAGGGCCAAGGCGCACCGCAATAAGAccgaatga
- Protein Sequence
- MYECSFCDFVFTQKANFQRHLKDAHNADPHATNKLEVMCSLDGHLRKELVCRICLIRTTDMQAHMIANHSQNLNVKCGLCNKLFTGMATFQAHMPTHANRTEVPAKFPCDFQDCNKRFFEKEHLMLHLKHEHKIKDKRLIFDCSFCDQVYARKTNFVDHMRIKHYAMDCVVAISPAKMLSSLDGHLKCNFCPEKFSSRANLETHIMWHLRCMRQSNGIFIFGCVLCPYKSKKYRTTERHYRDSHKIDWPFFLFECDYCPMGFIHESKFVLHMDQHNGKKYNCDHCDKSFKCKDGIYRHILRKHVTENQCRFVCETCGARYYEKSKFEDHTARHSNDRPYKCLHCDYTTFREKYLVLHKKTHLAKRSKCNICKKYFLNLPGHVSASHNKREFPCQLCGKTFKRKAQCQRHLDAHLGNNYFPCDICGKVYSAAESVKKHKFDKHGIMPYECKTCKKGFAKHIELKKHRAKAHRNKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -