Cdip005585.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451260.1:16114803-16118162[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3 2.2e+02 2.7 0.0 3 23 135 156 133 156 0.91 2 19 3.6 2.6e+02 2.4 0.4 1 13 195 207 195 208 0.92 3 19 2.2 1.6e+02 3.1 0.4 2 23 305 328 304 328 0.89 4 19 0.15 11 6.8 3.7 3 23 347 368 345 368 0.95 5 19 8.6 6.2e+02 1.3 2.8 2 23 374 396 373 396 0.91 6 19 0.83 60 4.5 1.1 1 12 403 414 403 426 0.83 7 19 2.7 1.9e+02 2.9 0.5 1 8 437 444 437 460 0.68 8 19 0.012 0.88 10.2 2.3 1 23 466 489 466 489 0.95 9 19 0.026 1.9 9.2 1.2 3 23 497 518 496 518 0.97 10 19 5.6 4.1e+02 1.8 4.3 1 23 526 549 526 549 0.91 11 19 0.00033 0.024 15.1 0.8 1 23 555 577 555 577 0.96 12 19 3.8e-06 0.00027 21.3 2.0 2 23 584 605 583 605 0.97 13 19 2.5e-08 1.8e-06 28.1 2.5 1 23 610 632 610 632 0.98 14 19 9.6e-05 0.0069 16.8 3.0 1 23 638 660 638 660 0.99 15 19 9.9e-06 0.00071 19.9 4.8 2 23 667 688 666 688 0.96 16 19 1.1e-05 0.00081 19.8 0.2 2 23 695 716 694 716 0.96 17 19 1.5e-05 0.001 19.4 0.1 2 23 723 745 722 745 0.94 18 19 7.3e-07 5.2e-05 23.5 0.6 1 23 752 774 752 774 0.99 19 19 0.0048 0.34 11.5 1.4 2 23 781 803 780 803 0.91
Sequence Information
- Coding Sequence
- ATGTTCCAGCCGGGAGGAGACGGCAGCTCCCTTCACGATGACCATGACCACAGCTTGCAACTGGACAGTACGCTCTCACCTTCAATTTACGATGCCGCTGACTTTCTGCTTAGAGAAACGGGTTCTTTAATTAAGGATGACATTCCTGACAGACTGTGCTGCTCGTGCATGTGCGCAACTTCATGTGTCTGTGCTGCATCCACCTATGATTCTCAGAGACCATCCACTTCCTCTGCCAGCACTTCTTGTCAAGTCTGCAATGGAATTACAAATCAGCCTACATTGCGGATGGCGCATGAGATTATATGTGCATCGATGTCATTTTGCTGTCAATGCTGCATTACATTTCCCTCTGGCTTAGCAAAAGATCTGCACATGGTACGGGAACACAGTTCTCTGCCTTGCGTTGCCTGTGGCGAGTTATACTCATCTGAAGTAAAATTGGGCAACCACCTTGCAAGGGAGCACTCCTTATACCGCTGCCCTTGCTGTGATCAAATGGTATCTGAGAACCTCGAAGAACATCTGACTTCATTTCACAAAAGCTGTGCTATGAGACATCCTTTTTTAGTAAGACCTGAGTACACATGCCGCATGTGCgtagaaaaattcaacactCAAGAGATCTCTTCTATTGTTAACCACTTCATGTCTGAGCACAATGTTAAGGATGAAAAAATCCTTTATTTCCTGAGCAAGCTGCATGTTGATTCAGACGATGACGAACTTACCAACGAGATCCTAGTGCCCATGGTGAATCTCTTTGCAAGTTCCGAGTCCAGCTCCGAAGAAGATGACTTTGAGCAGCCTGATGACCATTTTGGTATTGATCTCCTTGACGTGGACCCTGAAGATGTAGACTGTGTATCTGAGTCAAGTTTCGATGATGCAGATGAAGTCGATCCTATTATTGAGTGTGAGCTGTGCGAGGAAAAGAGTTTTGTCTCCCCTCGGGAGCTATGCTTTCACCTGAACGAGGAACACAAACTAGGGTGGGACAAAAAGAGCGAATCAGATTGCAAGACAGCTGAATATGGATGCTACCTTTGCACATTCATATGCAAGAGTAAAAGACAGCTGAAGACTCATTTGAAGAATGATCACACACATCTGGGAAACAAATGCCGCTTTTGCCCTGTGAGATTCAAGGAACATCAAGACAGAGATAAACATCAATTAGAGCAGCACCCagatcaacaaaatttttaccagtGCCCTATTTGCCAGTTTGTTTGCACAAGCACTgCCATTTCTCAGAAGCACTTAACTTCAAGTCATCCCTCAGAAAAAATGGAGTCAAAAGTTATGTATAAGTGCAAAATTTGTCACCAGCTAATGCCATCAATTTTGATGTTGAGAACTCACTTTAGTTCCTGGCACCTTGGAGCTATGATCTACAGATGCAGATTGTGCTCCGCAACTTTAAAGACAAAGAAGACTCTGAACCACCACGTGAAAGCTGTTCATTCCAAGTTCAGGAAACGAGACTGTTCCATTTGCAACAAGGAATTCCTAACTAAGAGAGCTTACACCATCCATTTCAGGATGAAGCACAACAAAAGCTCAAAAGTTGGATTTTGCTGTCGTTTGTGCCAAAATAAGTTTGACACAAAAGAGGACAGGAAACTGCATTACACATTAGATCATGAAGGAGAAAGTCCTTACCACTGTGAAGAATGCGGAAAGGGGTTTGCCAGTAAATCAGGGATGTATGGACACAGACAGTTGCACACAGGAACTGGCATCAGCAAATGTGAACACTGCGGGAAGGAATTTACgCGCAAAGACAGCTACAATGAGCACCTTTTGATTCACAATGGTCCGCGCCACAAATGCCCACACTGCCCAAAGGAGTTTGTACAGAGGTCAAACCTCATCCGTCATATCCGGATCCACACGGGAGAAAAGCCCTATCAGTGTACCTTCTGTGACAAAAAGTTCTCTGACAAAGGCGCATGCAATTCCCACATCAGAGTTCACACAAAGGAAGAAACCTGCAGTTGTCCATACTGTGGACAAACTTTCTCAAAGAAACAGAAACTTAAATACCACATTAGGAAACACACAGGGGAAGGTTTGATTGAGTGTGAAATATGCAACAAGATGTTCACCAACAGTTTTGCTCTTAAAGAGCACCGCATCATACACAACCGTCAAACCCAGGTAGTGTGTCCTCAATGTGGAAAGGGCTTCaactctgaaaaatatttgcagcgCCATGTGTCTATTGTACACGAACCCACCAACAAGTCCTTTCAATGTTCAATTTGCCCTAAGAAATTTTCTCAACAGGCGAGGCTTAGGGCTCATGTCATGACACACAGTGGAGTGAAGCACATGAAGTGTCTTCTATGCAGTAAAGCGTACTCTGTTAGAAAGTCGCTAAGACGGCATCTGTTTGAAAAGCACCAGATAGGACCAGAAAACCCTCAATACAAGCAAAGCTTTTACACTATGTCTCCAGAAGAAGCCGGGCTTCAAGTCATTGATAGCGAAACAGGAATGCCCAGTGAGTCCACATCTGGGAAGAAAAGGCGTCGAGTCGAGCAAATTGTACAAAATCTGCAGAACTCGCTGTCATCGTCGCAACAATCAACAAAAATCGCTCCATTAGTGATAAACCTCAACACTAGAATGGTGCACAGACAAGAAACTGATGGGGAAGCTAGTGGATCTTCGAcaggttaa
- Protein Sequence
- MFQPGGDGSSLHDDHDHSLQLDSTLSPSIYDAADFLLRETGSLIKDDIPDRLCCSCMCATSCVCAASTYDSQRPSTSSASTSCQVCNGITNQPTLRMAHEIICASMSFCCQCCITFPSGLAKDLHMVREHSSLPCVACGELYSSEVKLGNHLAREHSLYRCPCCDQMVSENLEEHLTSFHKSCAMRHPFLVRPEYTCRMCVEKFNTQEISSIVNHFMSEHNVKDEKILYFLSKLHVDSDDDELTNEILVPMVNLFASSESSSEEDDFEQPDDHFGIDLLDVDPEDVDCVSESSFDDADEVDPIIECELCEEKSFVSPRELCFHLNEEHKLGWDKKSESDCKTAEYGCYLCTFICKSKRQLKTHLKNDHTHLGNKCRFCPVRFKEHQDRDKHQLEQHPDQQNFYQCPICQFVCTSTAISQKHLTSSHPSEKMESKVMYKCKICHQLMPSILMLRTHFSSWHLGAMIYRCRLCSATLKTKKTLNHHVKAVHSKFRKRDCSICNKEFLTKRAYTIHFRMKHNKSSKVGFCCRLCQNKFDTKEDRKLHYTLDHEGESPYHCEECGKGFASKSGMYGHRQLHTGTGISKCEHCGKEFTRKDSYNEHLLIHNGPRHKCPHCPKEFVQRSNLIRHIRIHTGEKPYQCTFCDKKFSDKGACNSHIRVHTKEETCSCPYCGQTFSKKQKLKYHIRKHTGEGLIECEICNKMFTNSFALKEHRIIHNRQTQVVCPQCGKGFNSEKYLQRHVSIVHEPTNKSFQCSICPKKFSQQARLRAHVMTHSGVKHMKCLLCSKAYSVRKSLRRHLFEKHQIGPENPQYKQSFYTMSPEEAGLQVIDSETGMPSESTSGKKRRRVEQIVQNLQNSLSSSQQSTKIAPLVINLNTRMVHRQETDGEASGSSTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -