Basic Information

Insect: Cloeon dipterum
Gene Symbol: Rreb1
Assembly: GCA_949628265.1
Location: OX451259.1:30210713-30224857[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.3e-05 0.0017 18.8 2.1 1 23 226 248 226 248 0.98

2 17 7.6e-05 0.0054 17.2 0.5 3 23 277 297 275 297 0.98

3 17 9.3e-08 6.7e-06 26.3 3.2 1 23 303 325 303 325 0.99

4 17 2.6 1.8e+02 2.9 0.1 3 23 379 400 378 400 0.90

5 17 0.001 0.075 13.6 0.1 1 23 447 470 447 470 0.95

6 17 0.011 0.76 10.4 0.2 1 23 565 587 565 587 0.97

7 17 0.021 1.5 9.5 0.5 1 23 594 616 594 616 0.99

8 17 0.011 0.8 10.3 5.5 1 23 622 645 622 645 0.97

9 17 0.081 5.8 7.6 0.1 1 23 671 694 671 694 0.90

10 17 0.00046 0.033 14.7 3.7 1 23 949 972 949 972 0.96

11 17 4.8e-05 0.0034 17.8 0.3 3 23 1165 1185 1163 1185 0.97

12 17 0.18 13 6.5 5.4 1 23 1191 1214 1191 1214 0.96

13 17 0.035 2.5 8.8 1.6 1 23 1262 1286 1262 1286 0.95

14 17 0.0015 0.11 13.1 1.0 2 23 1350 1371 1349 1371 0.96

15 17 0.39 28 5.5 0.6 1 23 1376 1399 1376 1399 0.95

16 17 0.015 1.1 9.9 0.5 3 23 1451 1471 1449 1471 0.93

17 17 0.11 7.7 7.2 5.7 1 23 1477 1499 1477 1499 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.3e-05	0.0017	18.8	2.1	1	23	226	248	226	248	0.98
2	17	7.6e-05	0.0054	17.2	0.5	3	23	277	297	275	297	0.98
3	17	9.3e-08	6.7e-06	26.3	3.2	1	23	303	325	303	325	0.99
4	17	2.6	1.8e+02	2.9	0.1	3	23	379	400	378	400	0.90
5	17	0.001	0.075	13.6	0.1	1	23	447	470	447	470	0.95
6	17	0.011	0.76	10.4	0.2	1	23	565	587	565	587	0.97
7	17	0.021	1.5	9.5	0.5	1	23	594	616	594	616	0.99
8	17	0.011	0.8	10.3	5.5	1	23	622	645	622	645	0.97
9	17	0.081	5.8	7.6	0.1	1	23	671	694	671	694	0.90
10	17	0.00046	0.033	14.7	3.7	1	23	949	972	949	972	0.96
11	17	4.8e-05	0.0034	17.8	0.3	3	23	1165	1185	1163	1185	0.97
12	17	0.18	13	6.5	5.4	1	23	1191	1214	1191	1214	0.96
13	17	0.035	2.5	8.8	1.6	1	23	1262	1286	1262	1286	0.95
14	17	0.0015	0.11	13.1	1.0	2	23	1350	1371	1349	1371	0.96
15	17	0.39	28	5.5	0.6	1	23	1376	1399	1376	1399	0.95
16	17	0.015	1.1	9.9	0.5	3	23	1451	1471	1449	1471	0.93
17	17	0.11	7.7	7.2	5.7	1	23	1477	1499	1477	1499	0.97

Sequence Information

Coding Sequence: ATGGGACGCCCAGTGTTGAAAAAGCCGAAACGTCGGCCCCAGAAAAATGCGGCCAAAAAGCAGACGGCGCGCCGCCCTTCGCACCGGAACGCTGAGATGCGCGACACTCCTGTATTGGGCTCTGCCCATGCTATCCCCTCCACAACCACCACCTCAGATGCATCTTCTCCCACAGCCGCCTCTGTACTCTCTTCGCCAGTCTTGCCCGTGGACTCCTGCTCGACGGTTCAGTCTCCGACCGGTAGATCATCCTCGAGGAGAACTCGACTCTCGGACTCGCTTCAGAAAATCATAAATTCGTCCTCGCCTGAGACTCGCAGCAGCCCCAGCTCGACCGACCTGAGTCAAGACACGAGCCTCAACACGACGGGACCGCAACTGGTGTCCAGCAGCCCTCTCTCCTCGCCGCCCGAGTCGCTCAAGGGCTCCAGCCCTTTGGAAACCGACTTGATGCAGCCGGCAGACGAGCCGATGCCGATGCCCAGCGCGGTAGTCGATCAGGCACCCCCCAAAATGACAGGCGCCAGGAAGCGGAAACCCTGGCGCGCGTATAAACGATCTCAGAACCCTATTGACGAACGCTTAAAACCGCAGGAGCTATCTCAAAAATGTCCCTCACCCTCAGACGCTAGCTCAAGCGAGGTGTGTACCGAGGGCGAAGATGATGGCTCCAAGCATGTGTGTCCAGTGTGCAACATCAGCTTCGACCAGCAACACGACTTCACCCTGCACATCAGGAGTCACAACATAGCGTCCTCTAGCtgtggcggcagcagcagcaacagcagcacgCCGCTCAACCAGAATAACAACAGCAAGGGCTTTGGCTGCAGCATCTGCCAGAAGACGCTGAGCTCGTCCAGCTCGCTGGACAGGCACATGTTGGTGCACTCGGGAGAGAGACCGTTCCAATGCAGCATCTGCGGACAGACGTTCACCACCAACGGCAACATGCACCGCCACATGCGCACCcacaacaataataacaacTGCAGCGTCAATAATAATGACAGCGATAGCAGCGATGAAAACAAGTGCAACAAAAAGAGGAAGTCAAATGGCGACGCAAATCATGGAATTCCAGCAAAGAGACGCAGCCTCTCTCCGCCATCTGACTCTGGCTCAAGATTGCTGTGCGGCAAGTGCACCCTCACCTTCGATGGAGTGCGAGAGCTCAATCTGCACCGATATGCCGCCCATGGAGACGACTCGGTAACTGCTGGtgaaaataatagaaaatccCTGAAGGGGTTGAATGGTCTCGACTTTGTGGACTTCTCAACCAGCAAATTCCCTTTGATCGCGGCGGCGTATATAGAGCGCTCAAAAGAGGGCTGGTTCCAATGTAAGGAGTGCGAGCGGGCTTTTCCATCCGATGCCTCGCTGAGAATGCACGTGGATTCCGCGCACTCTGCCGCAGCAGCTCTCAACGCTGCTTCCAAAGAACTGATGTACTCCAGGCGCAAGCTGCAGTATGAAGAACAGAAGGAGGACTTTTTTGCCGGCCTTGACCTGCAAACAAAAAGCCCGTCGTCTACGCCGTCCCCAAGCATCAAAGTCCGGTCTATCAGCGAGCTGTCTAACCACTCTAAATTCACTGAAAACAAAGAAGAGCCAGTCGAAGGAGAGCTGGAGAAATCGACCTCTTCGTCCTCTGATGAAAGTCTGCGCCAGATGAAACTCAAGGGAGAATTCCCGTGCCGCCTGTGCACCATGGTCTTTCCCAACTTGCGGGCGCTCAAGGGTCACAGCAGAATCCATTTCGAAAAGGGGGGCCCTTACCAATGCAACATGTGCATCGCCAAGTACGACGAAAAAAACTCCCTGGTGCAGCACATGCGGAGTCACAATGGAGAGAGGCCGTTCATGTGCCGCCTCTGCCACTACGCCTTCACCACCAAGGCCAACTGCGAGCGTCACCTGCGTGTCAAGCACCAACTGGACAACAGGGAAGATATCAGAAACTCTATCCAATGCACTCCGGAGGGCGGCGTTCAGCCTGATAAGCCTCATGAGTGCGCCAAGTGCGACAGACCTTTTCCTACCAGGGTAGCAGCCCTCAGCCACGTTGCCATTGAGCACCCCACCTTCTCTGCCGCTGACCTAGTCAGGCTAGGAGCTGACCCTGAAGAGATGGAGGACGAGAAAAAGTTGCTGATGTCACCTTACAACTCTCCTCGTCGCTGCAGCTCCAGCTCCAGCAGGGATAGCATTTCTCCTCCAACGGCAACCGCTCTCGACCTTAGCGTCGACGACGTTCTAGATCTCAGCAAGAAGCCGGCCCCTTCGGCCTCTGTCTCCTCCACCATACCAAAGGCGCCATTGACCGTCCAAGAAGAGCCGGAAGATCTCACCAAGCCGAAGCACAACATACCTCTCATTCCACCTCACATTCCTCAAGTTCAGCACATTCCATACTTCCCTGCACCGCATCCGCAGTACTTCACGCCGCCTCTGCTGAGCCGGTTTTCATACATGAATGGAAGGTCGCCGTACCCTGACAGCATGCTGCCCCTGCTGCCCTTCTTGCACAACATGCAGCTCGCCGCGCAGCCACCCCCACCGCCGCCCCAGGTCGCGCAGATGTCCTCGCTGGAAGAGGCCCAGAAGCAACTGCTGCGTGGTCTCCAACTGAGCTCAGGTGGATCGCTGGTCCTCGACTCCCTTCGCAAGCCCCCGGCGACAGTTGTCGAGCCTTCCAGGGTCAAGTCGCCTGTGCTGCCGCAAGCAAAGCCGTCGCCCAGCGAGGCGGTGGCAAAGAGCAACTCGCCCGGCGTGGTGGTGATCAAGAACGGAGTGCTCATGCCCAAGCAGAAGCAGAGGCGCTATCGCACTGAGCGACCCTTTGTATGCCCACACTGCCACGCGCGCTTCACTCTTAGGTCAAACATGGAGCGCCACGTGAAGCAGCAGCATCCACAGTGCTGGAAGAAGCGGCCGCGAGGCGGACGACGATCCTCACCAACTAGCCTGACTGCCATGCCTGCCGATCCGGCGCCTCTCGCGTTCAATGCCCCAGTTGCAAGTGACAGTGCATCTAATGCCGAGCCACGAATCTCTGAAGAGGTGAAATTGGCGCTTTCCCACCAGCTAAAGAACAAGCTAAATTGCGCTGCTGATAAAGACGATGATGCTCCCATGGAGCGGGAGATGGAGGAAGACGAGCCAGAGCTAGTGATTGATGAGCAGCCGAAAAGCAAAGAGCAGCCCGAAACCGACTTAGCCAGCGTGTCTCGCTTGGTGGTCAACGTGACTGCTCAGAGCTTCCAGCATTACTTCCCAGGCCAAGACGACGAggacgaggaggaggaagagggCTTTATGGAGGGCGACGACATAGACGAGGGCGTGTTGGACGACGGCTCAAGCAGCGGCGAGGGTCAGACCACAAGCGGGGACGAAGGCCGAGGAGGCAACCACGCGCTAAGTGCTCCTCCCAGCAGCCCCGGCAAGAAAAAGAGCGCGTACTCGACGGCACCTAACCGAGTCATCTGCCCTTACTGCAACCGCAAGTTCCCGTGGTCGAGTTCACTGCGCAGGCACATCCTGACGCACACCGGGCAAAAGCCGTTCAAGTGCGCCCACTGCCCGCTACTTTTCACCACCAAGTCCAACTGTGACCGCCACCTGCTACGCAAACACTCAAAGAAGAACGGCAAGGACAAGGAGGCCAACATTGCGTCGCCACCGTCGACCCCTGTGGCAGCACCCGcactgccgctgccgccatCGAGCAGCGACGAGAGCCATTTGCACCTGAGCCGCAACGTGCCAGAACGGCCCTTCAAGTGCGTCCTGTGCCCCAGCTCGACGTTCAGCAGCGATCGAAATTTGCGCAAGCACATGAGCACCAAGCACCCAGATAAGTGCAACTCATCGCCGACAGCCACCAGCACGTCGGCCACGCCACCCAGCAGTGGCAAGGAAACTGCCGTGCTGAGCGCCACAGACAGCAGCCCCCGCGCCACGCCCGAGTTGCCGCAGCCGTCGTGCAGCGAGAGCAGCCGCTCGCCGAGCGAGCTGCCGGCCGGCTCCTCGGCCAGCCTCACCTGCTACAAGTGCAACCAGACGTTCTCGAGTGAGGCGCGTCTCACCACGCACCTTGAGAGCCACTCGGACCTGCCGTTTAAGTGCCATCTCTGCGAGAACAGCTACGCCGAGCGGACTGAAGCGCTCGAACACATCAAGCTCGAGCACAACGATGAGTACAAAGTGCTGGTGAACAAGGGCGCCCTGGATCTCAACGCTGAGGACCATCCATCGGCCGTCAACAATAATAACGTTGACACCGACGAAACCCTCGAAAATCTTCGAGGCAAATTTCCAGACTACGCTAACCGAAAGGTAATGTGTGCTTTTTGCATGCGTCGCTTTTGGTCGGCTGAAGACCTCCGCCGACACATGCGCACCCACACTGGCGAGCGTCCGTTTTTTTGCGACGTCTGCCTCCGCAAGTTCACCCTGAAGCACAGCATGCTGCGCCACCGCAAGAAGCACCCGCCTCAGGAGGTGCAGCGCGCGATGTCCGCCGCCGTCAGCAACCACAACAGTGACGACGACAACAACTCTAGAAGAAGTCACCGGCACTGGAGCCCGTTCCCGACAGCGCCCGAAGGGCCCCAACCTGGTGCTCAGGTGGTCCGTGAGTCCAACGAAGTAGGATCTGATCTCATTGGCAATCTGCTTGGATTTGACCGTGACATGATCGACAATATGCTGTCCAGGTCAGCTGACGACGCGGCCGCGCTCCTGGGACTGCCCAGCCAGCGGTAA
Protein Sequence: MGRPVLKKPKRRPQKNAAKKQTARRPSHRNAEMRDTPVLGSAHAIPSTTTTSDASSPTAASVLSSPVLPVDSCSTVQSPTGRSSSRRTRLSDSLQKIINSSSPETRSSPSSTDLSQDTSLNTTGPQLVSSSPLSSPPESLKGSSPLETDLMQPADEPMPMPSAVVDQAPPKMTGARKRKPWRAYKRSQNPIDERLKPQELSQKCPSPSDASSSEVCTEGEDDGSKHVCPVCNISFDQQHDFTLHIRSHNIASSSCGGSSSNSSTPLNQNNNSKGFGCSICQKTLSSSSSLDRHMLVHSGERPFQCSICGQTFTTNGNMHRHMRTHNNNNNCSVNNNDSDSSDENKCNKKRKSNGDANHGIPAKRRSLSPPSDSGSRLLCGKCTLTFDGVRELNLHRYAAHGDDSVTAGENNRKSLKGLNGLDFVDFSTSKFPLIAAAYIERSKEGWFQCKECERAFPSDASLRMHVDSAHSAAAALNAASKELMYSRRKLQYEEQKEDFFAGLDLQTKSPSSTPSPSIKVRSISELSNHSKFTENKEEPVEGELEKSTSSSSDESLRQMKLKGEFPCRLCTMVFPNLRALKGHSRIHFEKGGPYQCNMCIAKYDEKNSLVQHMRSHNGERPFMCRLCHYAFTTKANCERHLRVKHQLDNREDIRNSIQCTPEGGVQPDKPHECAKCDRPFPTRVAALSHVAIEHPTFSAADLVRLGADPEEMEDEKKLLMSPYNSPRRCSSSSSRDSISPPTATALDLSVDDVLDLSKKPAPSASVSSTIPKAPLTVQEEPEDLTKPKHNIPLIPPHIPQVQHIPYFPAPHPQYFTPPLLSRFSYMNGRSPYPDSMLPLLPFLHNMQLAAQPPPPPPQVAQMSSLEEAQKQLLRGLQLSSGGSLVLDSLRKPPATVVEPSRVKSPVLPQAKPSPSEAVAKSNSPGVVVIKNGVLMPKQKQRRYRTERPFVCPHCHARFTLRSNMERHVKQQHPQCWKKRPRGGRRSSPTSLTAMPADPAPLAFNAPVASDSASNAEPRISEEVKLALSHQLKNKLNCAADKDDDAPMEREMEEDEPELVIDEQPKSKEQPETDLASVSRLVVNVTAQSFQHYFPGQDDEDEEEEEGFMEGDDIDEGVLDDGSSSGEGQTTSGDEGRGGNHALSAPPSSPGKKKSAYSTAPNRVICPYCNRKFPWSSSLRRHILTHTGQKPFKCAHCPLLFTTKSNCDRHLLRKHSKKNGKDKEANIASPPSTPVAAPALPLPPSSSDESHLHLSRNVPERPFKCVLCPSSTFSSDRNLRKHMSTKHPDKCNSSPTATSTSATPPSSGKETAVLSATDSSPRATPELPQPSCSESSRSPSELPAGSSASLTCYKCNQTFSSEARLTTHLESHSDLPFKCHLCENSYAERTEALEHIKLEHNDEYKVLVNKGALDLNAEDHPSAVNNNNVDTDETLENLRGKFPDYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFFCDVCLRKFTLKHSMLRHRKKHPPQEVQRAMSAAVSNHNSDDDNNSRRSHRHWSPFPTAPEGPQPGAQVVRESNEVGSDLIGNLLGFDRDMIDNMLSRSADDAAALLGLPSQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -