Basic Information

Insect: Cloeon dipterum
Gene Symbol: ham
Assembly: GCA_949628265.1
Location: OX451261.1:30458456-30476939[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00028 0.02 15.4 0.0 2 23 146 168 146 168 0.93

2 9 1.7 1.2e+02 3.5 4.6 1 23 175 197 175 197 0.96

3 9 2.2e-07 1.6e-05 25.2 2.1 1 23 203 225 203 226 0.95

4 9 7.9e-06 0.00057 20.3 4.5 1 23 232 254 232 254 0.95

5 9 2.6e-05 0.0018 18.6 5.0 1 23 260 282 260 282 0.99

6 9 0.00071 0.051 14.1 0.6 2 21 290 309 289 310 0.95

7 9 5.1e-09 3.7e-07 30.3 1.0 1 23 609 631 609 631 0.99

8 9 3.2e-07 2.3e-05 24.7 1.7 1 23 637 660 637 660 0.97

9 9 8.9e-06 0.00064 20.1 3.4 1 23 666 688 666 688 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00028	0.02	15.4	0.0	2	23	146	168	146	168	0.93
2	9	1.7	1.2e+02	3.5	4.6	1	23	175	197	175	197	0.96
3	9	2.2e-07	1.6e-05	25.2	2.1	1	23	203	225	203	226	0.95
4	9	7.9e-06	0.00057	20.3	4.5	1	23	232	254	232	254	0.95
5	9	2.6e-05	0.0018	18.6	5.0	1	23	260	282	260	282	0.99
6	9	0.00071	0.051	14.1	0.6	2	21	290	309	289	310	0.95
7	9	5.1e-09	3.7e-07	30.3	1.0	1	23	609	631	609	631	0.99
8	9	3.2e-07	2.3e-05	24.7	1.7	1	23	637	660	637	660	0.97
9	9	8.9e-06	0.00064	20.1	3.4	1	23	666	688	666	688	0.99

Sequence Information

Coding Sequence: ATGGACCTCTCCAGACACACGAGCCAAGATCTCGAAGACAACGGGTTAGCCACCGAGTCGCAGGAGCAGCCGTTTGTCTCAGCCGCAAGCGAGTGCGACGggcgaagcagcagcagcgctgCCGCCGTCCAGGAGATGACCCCCGAGAAGCAGCAGGCTGAACTGGAAGCAAAGCTCGCAAAGTTCGTTGCcgattccgccgccgccgaagtCGCCCGTTCCCACGCGTTCCAGAACTTCTACCTATCGTTCCAGAGGGACAACAGGCAGAAGCACGACCACTGTGAACGGTTCCAAGCTCAAAGCAAGCAGACTGGTGGCAGAGCCCGTGCCGGCCTCGAGAGTCCGTCAGCCCAATCGCACTGCGACACAGCCACTGAGTCCGAGACCGGCGACGAAGACACCGGCGACGAGGTAAACGACGACGAAATCAACCGCTGCCCTGACTGCGACAAACCCTTCATCAACCTTGAATCGTTGGACGAGCACCTGGTGTCAGGTCACGGCTACCAGGCCGGGCAGCACAAGTGCGACCACTGCGCGGCGTCCTTCAGCTGGCGGCCGTGCTTGCTGCGGCACAAGAGCGTGCACGGCGAACAGAAGAAGTACCACTGCGAGAACTGCGCCAAGGTCTTCAGCGACCCGAGCAACCTCCAGAGGCACATCAGGGCGCACCACGTTGGTGCCAGGTCGCACGCGTGTCACGAGTGCGGCAAGACGTTTGCCACGTCGAGCGGGCTGAAGCAGCACACGCACATCCACTCCAGCATCAAGCCGTTCCAGTGCGAGGTCTGCTTCAAGGCGTACACCCAGTTCTCCAACCTGTGCAGGCACAAGAGGATGCACGCCGACTGCAGGTCGCAGATCAAGTGCAACCGTTGCGGACAGGCGTTCAGCACGGTGACTTCGCTGTCCAAGCACAAGCGCTTCTGTGATTCGAGCCCGCCGAGCTCAGCTTCGAGCGGCTCCTCGAACGGCTCgtcgctgccaccgccgctggCTCCGCCGGTGCCGCCTCCTCTGAACACCAACCATCTGCTGCAGATGTATCCTCGTCTGCCCCTGTACCAGCAGATTCCCTTCCCGGCGCTTCCCGCGCTCTTCTCGCCCACTGCCCAGCCTTTTCTGGGATTGCTCACGCACAAGATGATGCAGCAGCACCACGAAGCCGCCAAGGAACAGGCTGCCAAGCATGCCAGGctCTTGCGAAAGACTGCGTTAGCTAACGAGATGATGTGTGCACAGGCGGCCGCCGCACCTGCGGCTGAACAGGAGCAACAACGACCGTCGCCGCGACCGGGCATGACGTACCCGAACCCTCGCGAGGTTCTGCCGCCGTCGCCGACCCAGCGGCGCCGCTCCACGCCTCCCTCTCCGCTGACCGCTCGAGGCGAGGCGTCGTCCCCGGCGCCGCAGCCGCTGGACTTGCGCATCGGCGCCAAGCGAGAGTCGCCTCCCAGAGACGACAGCCCTCCACCCCAAAAACGCAGTTCCGTGCCCCCGGAGGCAACGCCACCCTCACCACCCCCGCAGGACGAAGACGATGAAGAGTTGGAAGTTGACGATAAGGAAAAAGAGTGCTTGCGTCCGCCGGTGGCGTGTCCTTTGCCGCTGCACCCCTTTGACTCGTTCATGTACCGCCCAGCGTTCCCGCCCTCGTTCAACCCGCCGATGCACCTGCTGCCGTCTGCCAGGAGCTACGGCTTCGGCACCTCGCCGCTCAGTCCCAGGCTCGGCTTTGGGCAACCACCCTATAAGCCGATGCATGATTTGACAGGCGGCACCGTCGCCGCCCCGCCACCTCCTACCAAGCAGAAGGACAGATACACGTGCTCGTTCTGTGGAAAGGTTTTCCCACGGTCCGCCAACCTGACGAGGCACTTGCGCACGCACACAGGTGAACAGCCGTACAAGTGCAAGTACTGCGAACGCTCGTTCAGCATCTCGTCCAACCTGCAGCGCCACGTGCGCAACATCCACAACAAGGAGAAGCCGTTCAAGTGTCCGCTGTGCGAGCGGTGCTTCGGCCAGCAGACTAATTTGGACCGCCACCTCAAGAAGCACGAGGCGGAAGACGCGGGCGGCGTGCTGCTCGACAGTCCGGCCTCCAGCAACGACGACCCGGCGCTGGCCTTCGACGAAATCCGCTCGTTCATGGGCAAGGTGGCCGGCGGGTACGCGACCTCTGGCGCGGGCCCCAACCTCCCGCCGCTGTTTGACCTGTCGCGGACGCTggtcaacaacaacaacctgACGACGCCGTCGTTCCAAGCCAAAGGTGCGACCTCTCCGCGCACCCACGGACAGAAGGCCCCGAATCCCAACGTCGCGAACCCCGAGTCACCCTGA
Protein Sequence: MDLSRHTSQDLEDNGLATESQEQPFVSAASECDGRSSSSAAAVQEMTPEKQQAELEAKLAKFVADSAAAEVARSHAFQNFYLSFQRDNRQKHDHCERFQAQSKQTGGRARAGLESPSAQSHCDTATESETGDEDTGDEVNDDEINRCPDCDKPFINLESLDEHLVSGHGYQAGQHKCDHCAASFSWRPCLLRHKSVHGEQKKYHCENCAKVFSDPSNLQRHIRAHHVGARSHACHECGKTFATSSGLKQHTHIHSSIKPFQCEVCFKAYTQFSNLCRHKRMHADCRSQIKCNRCGQAFSTVTSLSKHKRFCDSSPPSSASSGSSNGSSLPPPLAPPVPPPLNTNHLLQMYPRLPLYQQIPFPALPALFSPTAQPFLGLLTHKMMQQHHEAAKEQAAKHARLLRKTALANEMMCAQAAAAPAAEQEQQRPSPRPGMTYPNPREVLPPSPTQRRRSTPPSPLTARGEASSPAPQPLDLRIGAKRESPPRDDSPPPQKRSSVPPEATPPSPPPQDEDDEELEVDDKEKECLRPPVACPLPLHPFDSFMYRPAFPPSFNPPMHLLPSARSYGFGTSPLSPRLGFGQPPYKPMHDLTGGTVAAPPPPTKQKDRYTCSFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHEAEDAGGVLLDSPASSNDDPALAFDEIRSFMGKVAGGYATSGAGPNLPPLFDLSRTLVNNNNLTTPSFQAKGATSPRTHGQKAPNPNVANPESP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -