Cdip009844.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451261.1:25249757-25253203[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.033 2.4 8.8 1.7 1 19 139 157 139 159 0.96 2 17 0.00034 0.024 15.1 0.2 1 23 179 201 179 201 0.98 3 17 0.006 0.43 11.2 0.5 2 23 214 235 213 235 0.97 4 17 2.9e-05 0.0021 18.5 0.6 1 20 238 257 238 259 0.94 5 17 0.0058 0.42 11.2 0.2 3 23 268 289 267 289 0.91 6 17 0.021 1.5 9.5 0.1 1 23 412 434 412 434 0.98 7 17 0.023 1.7 9.3 0.6 2 23 440 461 439 461 0.96 8 17 0.0021 0.15 12.6 0.3 2 23 469 491 468 491 0.93 9 17 3.8e-05 0.0028 18.1 0.2 2 23 496 517 495 517 0.96 10 17 0.011 0.78 10.4 0.6 1 23 523 546 523 546 0.94 11 17 0.076 5.5 7.7 1.9 2 23 550 571 550 571 0.97 12 17 8.1e-05 0.0058 17.1 1.5 3 20 578 595 577 598 0.92 13 17 0.019 1.4 9.6 3.0 1 23 604 626 604 626 0.97 14 17 0.00041 0.029 14.9 1.7 1 23 634 656 634 656 0.97 15 17 8.2e-05 0.0059 17.1 2.8 1 23 662 684 662 684 0.99 16 17 4.8e-06 0.00034 20.9 3.0 1 23 690 712 690 712 0.98 17 17 0.011 0.8 10.3 7.6 1 23 718 741 718 741 0.95
Sequence Information
- Coding Sequence
- ATGTActctaaaaaaggaaaatacattGATAAAAGACGTGAGAAAAAGACAGTATGGGAGCTGGCCAACTGCAAAAAGAGAtgttttatttgcacaaaacCCCTGGTTGGGAACCCAAGCTTTCTTCAGAAAGCAAGGACAAAGCACTCCAACGCTACATTCGCCACATGTTTGAAAGACATTGCTAACAGTAAATTTCCTGTGGCAGTTGCAGTCGATGATAGGtgCTGCTGTTACTGTGCATCATTAATTCAACAGAGAGACCAGTTAGAAAAAGATCTGGAAATCGTCAACAACACTCTCTTTACCTTTTTGAAAGCCAGCTGCTCATTAAGAAACATTGTGGTGAGTATTTCTGTGGAAAAGGAGGAAGCAGTGGTCTGTACAAAAGCTAAAGAGGCAAATCAAATCCTATATGAGTGCGGTACCTGCCAGAAACTGTTCAACAGCACTGACGATCTGTACAAGCATGGCTGTTTCGATCAGACCGCTGTCAGCTCAAAAGCTCGCCAAAAGAAAAAGAACGTTGAGACCTACCCTTGCAGCATGTGCCCCTCCACTTTCAACACCCCCATAGGTCTCCACGTCCACGCTAGAACTCACAAAAAGGAGCCAAGAGAGGAGAAAATCAGCTATCAGGAGTGCAAGAAGTGCAAGCTCATGTTTCCTTCTCTATTAATGTTGCAAGAGCATTATGAGACTCATGATAAATTCCGCTGCAGTACGTGCGgcaagaaattcaaaaataaagaggCGTTTGAGGAGCACCTCACTATTATGGCTAAACTACAACAGGATTTTTGCCTCTCTTGCAATCAAATCTTCAGTACCAAAGAGGCTCTCACTGTCCACCTTGCTGAGAGTCACGGTCCGATGGAGGACCCCAGTGAAAATTTGGCCTTGAGGGTTATTTACTCTTGCCCCTGCTGCAATGCCGAGATACCAGACACAAAGAGCATAAACGACCACAAGTCAACGCATTTGATGATGAGCATCGACTATGAAGCCACTAGCGATGAGCCCATTTGTGAAGTAACGGTGGAGAGCTCTCCAAGGAAGAGAATTAGAGAGTCTGATCAGGAGAGTGAATCTATAGGCAAAAGAGCAAACTCGGACCACAGCTACTCCCTTGAATTGCCTGAATTGAAAATGGAACCTGGCTACCTGGACAAGCCTGAAAATGTCCCACTAGAAACGGCAATGGCGCCTCCAGTCAAAATCAAGCCCTGTGTGTATGAGTGTGGCATGTGTGACGTTCGCGCTTCCAGCGTCAACAACCTACTAGAGCACTTCAAAACGCACAAAGACCAGCCAATCAGCTGCAAACACTGTGGCATCAAGATGCCTTCCATATCGGCCCTGTCAAAACACCTGCAGTACCATGTCAAACCTGGACAAGGAATCGAATGCTTGACGTGCAAACAATCCGTGGAGTCTAAAGACCAGCTTATGAAGCACATGCTTGGCTATCACAAGTACAAGCAGCAATGCAAGTACTGCGGCGAGCAGTTCCGCTATGCCACCGACCTCACGGTGCACTTGGCGCTGCACCCCGAGTCTCGCAACTTTCCGTGCCTCTTCTGCAACGATCGCTTCTCCAATATGGCCCAGCTGGAGAAGCACCAATCGCAGGAGCATCGCGAACCAAAATGTAACGTGTGCGGCAAGGAGATTCAGGATCGGAAAAAACTGCACGAGCACGAATTAAGGCATAGGAAGGACCTCAACCCATGCTCCAAGTGCCACAGGATATTCAAGACGTCAAGTGGTTTGAAAAATCACATGCCTGTGCACACTGGGGAGTACAAATATCGGTGTGATACCTGCCACAAGGGTTTCATGAATAGGAGTATTTTCAGAGAGCACGTTAACAACCATCTTGAGCAACCTGTAATGCTGTACAAATGCCGATACTGCGAAAAAGGTTTTAACCACCAAGGCTCGATGTGGATTCACGAGAAATGGCACAAAAACCCCTTCCCGTACCAATGCAAACTGTGTGGAAAAAAACTGCGGCACTCTTCAATCTTAGCGACCCACATGCGGCGGCACCAAGGATTGCGTCCTTACAAGTGCCCCCACTGCAACCTATCGGTCACCAGCTCCAGCACCTTCAAGCGGCACATGATGTTACACACCGGCAACTATGCCTACAACTGCCAGGAGTGCAAGAAAGGCTTCACGACTAAGCACAAGTTCCACCAACACCGCTACTCCGTTCACAGCATTCCTTTGCCAGCCAAGAAAGACGTTCCTCTCAAGATAAGTCTGGGGGCGACCAGATCCGCCAACAACTACGACGTGGACGATAATTTGATGCAGGATGAGGCTACCATCGCCTACATCGTTGGAGACTTTGAAGATAACGCTGCAGGAGACCAGGGGTTGGAGACAGCCACGgacgagcagcagcaagcTGTTGCTAACCTGGAGCTTCTGGACGAAAATTCAACTGCATGGACTGTGGTCCAGACGTGA
- Protein Sequence
- MYSKKGKYIDKRREKKTVWELANCKKRCFICTKPLVGNPSFLQKARTKHSNATFATCLKDIANSKFPVAVAVDDRCCCYCASLIQQRDQLEKDLEIVNNTLFTFLKASCSLRNIVVSISVEKEEAVVCTKAKEANQILYECGTCQKLFNSTDDLYKHGCFDQTAVSSKARQKKKNVETYPCSMCPSTFNTPIGLHVHARTHKKEPREEKISYQECKKCKLMFPSLLMLQEHYETHDKFRCSTCGKKFKNKEAFEEHLTIMAKLQQDFCLSCNQIFSTKEALTVHLAESHGPMEDPSENLALRVIYSCPCCNAEIPDTKSINDHKSTHLMMSIDYEATSDEPICEVTVESSPRKRIRESDQESESIGKRANSDHSYSLELPELKMEPGYLDKPENVPLETAMAPPVKIKPCVYECGMCDVRASSVNNLLEHFKTHKDQPISCKHCGIKMPSISALSKHLQYHVKPGQGIECLTCKQSVESKDQLMKHMLGYHKYKQQCKYCGEQFRYATDLTVHLALHPESRNFPCLFCNDRFSNMAQLEKHQSQEHREPKCNVCGKEIQDRKKLHEHELRHRKDLNPCSKCHRIFKTSSGLKNHMPVHTGEYKYRCDTCHKGFMNRSIFREHVNNHLEQPVMLYKCRYCEKGFNHQGSMWIHEKWHKNPFPYQCKLCGKKLRHSSILATHMRRHQGLRPYKCPHCNLSVTSSSTFKRHMMLHTGNYAYNCQECKKGFTTKHKFHQHRYSVHSIPLPAKKDVPLKISLGATRSANNYDVDDNLMQDEATIAYIVGDFEDNAAGDQGLETATDEQQQAVANLELLDENSTAWTVVQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -