Cdip010575.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451261.1:33105344-33108958[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00022 0.016 15.7 0.1 1 23 414 437 414 437 0.97 2 11 0.00011 0.0081 16.6 0.8 1 22 442 463 442 466 0.91 3 11 1.8e-06 0.00013 22.3 1.9 1 23 474 496 474 496 0.98 4 11 1.1e-06 8.2e-05 22.9 4.9 1 23 503 525 503 525 0.99 5 11 2.1e-05 0.0015 18.9 3.1 1 23 531 553 531 553 0.98 6 11 3.3e-05 0.0024 18.3 0.2 2 23 561 581 560 581 0.96 7 11 4.8e-05 0.0035 17.8 0.7 2 23 586 608 585 608 0.96 8 11 2.2e-05 0.0016 18.8 0.7 1 23 614 637 614 637 0.96 9 11 0.0078 0.56 10.8 7.8 2 23 649 670 648 670 0.96 10 11 9.3e-06 0.00067 20.0 1.6 2 23 675 696 674 696 0.96 11 11 0.16 12 6.7 6.2 1 23 702 725 702 725 0.96
Sequence Information
- Coding Sequence
- ATGGATGCGCTCCCTCGAGATCCGCAAGCTGTTGATGCTCCTTTCGGCGTCAAACAGGACAATTTCTTCAACAACCTGTTTAGCACAATTCGACGCTTGGAGATATTCGCCGATTGCTTCTTGGTACTGAGAAATAACGAAATAGTCCTCTCAAACTATTTCATTATGTCGGCCCTGAGCGGCGTGCTGAATTCGATGCCCAAAATGCACAGAGCCGGTTTGTACTTGGTGCTCCGAGATGTGGAGCCCTGGGCCGTCAAGTGGCTTCTCGAATACTTCTCCAAGGGCCAGTTGATGATGCCCATTAACGGTTTCGAGAGCATTAACAAGATTATGGCCACCCTCGATATCGATCTTTTAGGAAACTTCTTTCAATCTGACGAGCTTATCCACTTTTCAATGAGCCAAGAGCACAAATGTGAcattttgagtaaaatttgGGCCTCCAGGCACAAAAACTTTGACCTGAAAATCATCACAAAGGACAACCATGAAGTTTTCGCCCACTGGGCCGTGTTGGCTGCTTCCAGCGACCAGCTTTGTGATCTCTTTCAAGCTCCTGTGTCTGCGAGACCGCGTTTGATCGTCCTGCTGGAATTCGAAGCGGCCGATGTGGAACTGCTTCTAAAATTCTGCTACAAGGGTGAAGTGCAGATTCCGCACTTTCAGGCCATGAACGTGTGCAAACTGGCCAAAATATTCGGCATCAAAGGTTTGTATGACACGGTAACCCTGCTTGGCTACCACCTCGACAAACCGCCAGTCACCAAGCAAGGAACAACGCGGCTCACCTCTTACGAGCACAATGACACGGCCAAAAGACTGCTTTTTAAATCCCTTTTTGACCGAGAAACGCTGTCCGACTTGCAGCTCATCAGCAACGATCACACTTTTAAGGTTCATAGCGCAATTCTAAGCATCAGCCCCTATTTCAAGCCGATATTCAATCAGTCTGATTGGCGTCACTGCCTGATTTTTCTGTCCGAATATGCTCTCGAGACGGTGCAAGCCTTTGTAGATCTAGTCTACTACGGAGAAGTTGTCTACCACGGCGGAGTTCAGGACTTCAAATCCGTGATGAGAGGTCTTATCGACTTTTCTCTGCTGCCGATCAATGCTGTCGAACAACTACAGCCGGTCACCAAAGACCAAGAGGTTTTGGAACCAAAGCTACCGCCTGAGAAACCTCCTCAGGAAACACCAAGAGAAGCAACTGGGGACAGTGCCAAAATGCTGACGTATCCATGCGATATTTGTCCCAACGTGTTTTACAGCAGAAAGCGACTCAAGGCCCACATATTGAGTGAACACCCCCAGACAAAATTTAAGTGTAGCCAATGCGGATTGTTCTTTGAATCGCAAACTGAACTTAAAACCCACGTGAAAGAACTAGACCATAGGATCGTCGGCAGCAGCCTCTATTTTTGTAGCATTTGCAGCAAATCGTTTACTATGTCCAGCTCGCTTCGAAATCACTTGAAAGTGCACGACTCAAGCCACCCTTCTTTTGAATGTGACGTCTGCCACAAAACCTGCTCTAGGAAGGACTACTTGGAAGAGCACATGCGGACGCATACAGGGAAAAAACCATTCAAATGCTCCACGTGTGGAAAGAGGTTTGTTGGCAAAACTGGACTAAACCACCACAGGAAAATCCACGGGCCGCCAAGGAAAGAGTCTGTCTGTGAAATTTGCGGGAAAGAGTTCACCAGGAAAGCATTATGGACGCACATGAAAATCCACGACAAGCAACTCAAATGTTCAGTCTGCGGTCAGCTGTTTGCCACCAGCGGAACTCTGAAGAACCACATGACCAGGAAGCACTACGATGCCAAAAATCACGTGTGCGAAATTTGCAATAGGGCGTTCAGCTTGCGAGGGGAGCTAACCAGACACAAGAAAGTGGTCCATGAAGACAAGGGGGATCCTAGTCAGGAGCATTTGGAGTGCAAGCAATGCCACAAAAAGTTTTGCAGGAGCAGTTCTTTAAGATTTCATGAAAGGAGTCACGAGCATCAGAGTTCCTGCAAGACGTGTCACAAATCTTTCACAAGCCCAGAAGCTTTGAAAATTCACCTAGAGAGCCACAGTAGcgaaaataacttttcttgTGATCAGTGCAAAGTAAACTTTCGTTGCAAAAGTTCTCTCCGAAGACATAACAACAAAAAGCACATAGGAGCGAACAATGAAGAAATTTCCCCCATAGTCAGGCAAGAATCTCAAAATCGGCAACATCAGCACCTAGATCGTTATGAAAACGACCAGAAACCAAAGGTGCTAAATCCAGAGCCACCTGAGATGAACCAACACTACATCCAGGTCTACATTTCTCCTAATGACCAGCAgttctaa
- Protein Sequence
- MDALPRDPQAVDAPFGVKQDNFFNNLFSTIRRLEIFADCFLVLRNNEIVLSNYFIMSALSGVLNSMPKMHRAGLYLVLRDVEPWAVKWLLEYFSKGQLMMPINGFESINKIMATLDIDLLGNFFQSDELIHFSMSQEHKCDILSKIWASRHKNFDLKIITKDNHEVFAHWAVLAASSDQLCDLFQAPVSARPRLIVLLEFEAADVELLLKFCYKGEVQIPHFQAMNVCKLAKIFGIKGLYDTVTLLGYHLDKPPVTKQGTTRLTSYEHNDTAKRLLFKSLFDRETLSDLQLISNDHTFKVHSAILSISPYFKPIFNQSDWRHCLIFLSEYALETVQAFVDLVYYGEVVYHGGVQDFKSVMRGLIDFSLLPINAVEQLQPVTKDQEVLEPKLPPEKPPQETPREATGDSAKMLTYPCDICPNVFYSRKRLKAHILSEHPQTKFKCSQCGLFFESQTELKTHVKELDHRIVGSSLYFCSICSKSFTMSSSLRNHLKVHDSSHPSFECDVCHKTCSRKDYLEEHMRTHTGKKPFKCSTCGKRFVGKTGLNHHRKIHGPPRKESVCEICGKEFTRKALWTHMKIHDKQLKCSVCGQLFATSGTLKNHMTRKHYDAKNHVCEICNRAFSLRGELTRHKKVVHEDKGDPSQEHLECKQCHKKFCRSSSLRFHERSHEHQSSCKTCHKSFTSPEALKIHLESHSSENNFSCDQCKVNFRCKSSLRRHNNKKHIGANNEEISPIVRQESQNRQHQHLDRYENDQKPKVLNPEPPEMNQHYIQVYISPNDQQF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00344323;
- 90% Identity
- iTF_00344323;
- 80% Identity
- iTF_00344323;