Cdip012504.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451262.1:17603873-17608084[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.16 11 6.7 0.5 2 23 286 308 285 308 0.95 2 13 0.001 0.072 13.6 0.1 1 23 313 336 313 336 0.98 3 13 0.00024 0.017 15.6 1.6 1 23 358 380 358 380 0.98 4 13 2.9e-05 0.0021 18.5 1.4 1 23 385 407 385 407 0.96 5 13 2.5e-05 0.0018 18.7 3.7 1 23 413 435 413 435 0.98 6 13 2.5e-05 0.0018 18.7 2.4 1 23 442 464 442 464 0.99 7 13 0.00015 0.011 16.2 0.0 1 23 470 492 470 492 0.91 8 13 0.00018 0.013 16.0 0.1 1 23 498 520 498 520 0.98 9 13 6.3e-07 4.5e-05 23.7 1.0 1 23 526 549 526 549 0.96 10 13 5.5e-07 4e-05 23.9 1.4 1 23 555 578 555 578 0.98 11 13 8.7e-06 0.00063 20.1 2.3 1 23 584 606 584 606 0.99 12 13 1.7e-05 0.0012 19.2 0.6 1 23 612 634 612 634 0.97 13 13 0.00076 0.054 14.0 0.1 1 23 640 664 640 664 0.92
Sequence Information
- Coding Sequence
- ATGGAGCTGTTGGAGGGCGAGAGCACTGTTGTGCTACCCGGCACCCTGTGGTGCTTCATCTGCGGCAAGAGGGTGGGTTCCTCCGCCCGCTCTTGCACGAACATGTTCCAAGTGTCCACGTCGAGCAATCAGCTACTGCACAAATGCATCGCCGGCATAATTAGCAGGGACTTGGTCGAGGATCAGGTGCCGACTCCCAACCTGTGCAAGGCGTGCCACAAGACGGTGCTGAGCATTGACGAGGTGGAGATGCAGTTGAACGACATGAAGGAGGAAGTGATAAGCAGGTTGAAGAAAACAGAAGCCATGCTTAAGAACGGGGAACTGCCTCCGACTGACGAGCCTATTCTGCCAACCCCCAAGACAAAGACGCCGAGGGCTccgatttttatcaaacaggAGCAGGTTGAAGTCACTGTGGATGGCGTTAAGAAGGAGCCACAGCCCGCGCCTAAAAGGTCTAGGGGCAGACCTCCGAAGAAGGCGTACACCCTGGCCGCTAAAAAGGACGCAGAGCCTGATAgtCTGTTGGAGAAATTAGAGGCGATTCATGGTGAGGGCAAGAGCAGCGAGGCTGAAGACAGTCTTAAGCAGATCATCGTCAGCGTCGGCGCCGGGGATGACAATGAGGACGTGGAAGCGTTAGCCGACTTGAGCAACACCTCTGACCCTGACTTTGACGCGGCCCAAGAGGAGGTAGAGGAACCTAGCAAGAAAACCAGGACGCGAACAACCAGATTGGGTAGTAAAAAAGCCAATCCACTAGCCAAGAAGCGCGGCAGACCACGCGACAGTGGCAGAGGAGCCGAGGAAGAAGATACTCAAACTGGTGGATCTGAGCCTGAAGCTATGCTTAGCTGCTCTGCGTGTGAATCAAAGTTTACCGAAGTATCAAAACTAATCACTCACTTGAAAAAAGAGCACGACATCACCGTCTACATGTGCGAGTTTTGCGGCGGAGATTACGAAAACCAAGAAGCGCTTGAGGAGCACCAAAAAACGTCACATCCTCCGGATGCTAATGATGAATCTAGTCCCGTCTATGATGCAGATTTAGACGCCGAGGGAGATTTCCAGTGTGAGCTCTGCAACAAGCTCTACAACAACAAAAGGGCTCTGAAAGAGCACAAAAAAGTTCACTACGGACGCAATTATTCTTGCGACATCTGCCACAAAAGGTTTGCGACGAAAACGTTGCTGAGCGAGCACATTGTGCAGCACGACGGACAGCGCCCATTCGAGTGCAACACGTGCGCCAAAACCTTTGCCTCCAAATATTGCCTGAAGGTGCACTTGAAAACGCACCAAGTGCGACCGCGGCCCTACCAATGCCAATCGTGCCCAAAATCTTTTATGAAACCGGAGCATCTTTCTCAGCATGAGCGGACCCACACTGCCAAAAAGGAGTACCTGTGCACGACTTGTGGCAAGGGCTTTGCTAGCGCGCGAAACCTGGAGGTACACGGCGTGGTGCACACGGGCTACAAGCCGTTCGTGTGTCGCACATGCGGCAAGGCGTTCGCGCGCCGGGCTGAAATCCTCGACCACGAGCGCATTCACACAGGCGAGCGGCCCTTCCAGTGCGAGACATGTGGCGCAACCTTCAGCCAGAGGTCCAACCTGCAGAGTCACAAGCGGGCCACGCACCTTGACGACCGCCGATTCGTCTGCCCTGACTGCAAGAAGAGCTTCAAGCGGCGGAGACTTCTGGACTACCACATGCGATCAGTTCACACAGGTGAACGGCCTTACCAGTGCGAGGAGTGCAACGCCACTTTTGTCTATCCGGAACATTTCAAGAAGCACAAGCGCATACACACTGGAGAGAAGCCCTTCCGCTGTGAGgtgTGTGGAAAAGCTTTTAACTCTCGTGACAACCGAAACGCGCATCGTTTCATACACTCCAACAAGAAACCATATGAGTGCCTGGTGTGCGGCATGGGATTCATGCGGAAACCACTGCTCTACACGCATATGCAGTCTCAAGGCCACGTGCACGACACGATCGTGGTGAACCAGCCACAGGTGCCGCAGGGCGCCAGTACCATGGTGCACGAGGCGGCTGCCGCCGCTGGAATCTCTGCAGAGAAGGTGTACATCTCCACGCAGGACCCTGACGGTATTGAGGAGGCCGTGGAGACGATTCTGATCGAGACTCCGATGCAGTTTGCTGAGGGCGAGACGGTGGAAGTGGCTGGTGACGGGCCGCGGGCTATCATCCTGCACACTGCTGAGGACGTGAAGGAAGGAGGCAACATCCAGTTGGTGCACATACGCCTCGAGGGAGACGACACGCCGCAGTGGGTCAACATCTCCGAGCTGAATGAGGAAGATGAGCCGATGGAAGCTTAg
- Protein Sequence
- MELLEGESTVVLPGTLWCFICGKRVGSSARSCTNMFQVSTSSNQLLHKCIAGIISRDLVEDQVPTPNLCKACHKTVLSIDEVEMQLNDMKEEVISRLKKTEAMLKNGELPPTDEPILPTPKTKTPRAPIFIKQEQVEVTVDGVKKEPQPAPKRSRGRPPKKAYTLAAKKDAEPDSLLEKLEAIHGEGKSSEAEDSLKQIIVSVGAGDDNEDVEALADLSNTSDPDFDAAQEEVEEPSKKTRTRTTRLGSKKANPLAKKRGRPRDSGRGAEEEDTQTGGSEPEAMLSCSACESKFTEVSKLITHLKKEHDITVYMCEFCGGDYENQEALEEHQKTSHPPDANDESSPVYDADLDAEGDFQCELCNKLYNNKRALKEHKKVHYGRNYSCDICHKRFATKTLLSEHIVQHDGQRPFECNTCAKTFASKYCLKVHLKTHQVRPRPYQCQSCPKSFMKPEHLSQHERTHTAKKEYLCTTCGKGFASARNLEVHGVVHTGYKPFVCRTCGKAFARRAEILDHERIHTGERPFQCETCGATFSQRSNLQSHKRATHLDDRRFVCPDCKKSFKRRRLLDYHMRSVHTGERPYQCEECNATFVYPEHFKKHKRIHTGEKPFRCEVCGKAFNSRDNRNAHRFIHSNKKPYECLVCGMGFMRKPLLYTHMQSQGHVHDTIVVNQPQVPQGASTMVHEAAAAAGISAEKVYISTQDPDGIEEAVETILIETPMQFAEGETVEVAGDGPRAIILHTAEDVKEGGNIQLVHIRLEGDDTPQWVNISELNEEDEPMEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -