Cdip017231.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cloeon dipterum
Gene Symbol
-
Assembly
GCA_949628265.1
Location
OX451263.1:32824153-32830181[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 4.8 3.4e+02 2.1 0.1 1 21 304 324 304 327 0.66
2 16 0.0015 0.1 13.1 0.2 3 23 334 355 333 355 0.95
3 16 0.0071 0.51 11.0 3.0 1 23 421 443 421 443 0.96
4 16 0.00082 0.059 13.9 1.0 1 23 449 471 449 471 0.99
5 16 4.8e-08 3.4e-06 27.2 2.2 2 23 478 499 477 499 0.97
6 16 0.012 0.84 10.3 2.7 1 23 508 530 508 530 0.98
7 16 0.00052 0.038 14.5 4.0 1 23 536 558 536 558 0.98
8 16 2.4e-06 0.00017 21.9 3.2 1 23 564 586 564 586 0.98
9 16 0.00046 0.033 14.7 0.2 1 23 592 614 592 614 0.98
10 16 8.4e-05 0.006 17.0 0.4 1 23 635 657 635 657 0.98
11 16 6.4e-05 0.0046 17.4 0.7 1 23 663 685 663 685 0.97
12 16 0.0023 0.16 12.5 0.1 1 23 691 713 691 713 0.98
13 16 4.1e-06 0.0003 21.1 0.3 1 23 719 741 719 741 0.98
14 16 6.3e-05 0.0046 17.4 5.1 1 23 747 769 747 769 0.98
15 16 3.6e-07 2.6e-05 24.5 0.4 1 23 775 797 775 797 0.98
16 16 0.78 56 4.5 5.0 1 23 804 826 804 826 0.96

Sequence Information

Coding Sequence
ATGAATTGGTCGACGCCCGGCTTACCTGGTGCCCTGGTCGTGCGCTCCTACAGCATCCAACGAGCCTTTCAGTTTGCAAACCGGAGAAAAGGACTCGGAATTTCGGCACCAGACTCGTCAGCCAGCCCACCACttgtgatccAAATGAAACGCTTCGCCGTGCCAAATTGCAGCTCCTCCGACGAGAATATAGATAGCACTGCGAATTTTCGGCTTTATAATGATCCTCCGTTCTGCGAGCCGCAGGTAGAAATCCACATAAGCGCTGGAGAAGAAATCCACGATGAAAATTCCATGCCAATATTCGAGGTTTCAGTCAGCGACGAGTTTGAGGACGTCGCCGAGGACGAGGAGGAGCAAATCAAGCTGTGCTCGCGACTGGCGAACTTTTTCGCCCAGTCGAAAGTGGAATCGGGCTCCAAATGCTCGGAACTTTGCCGCATTTGCGGCGTGAAACGGAAAGAGATGGTGGGCATCTTCAGCGACGAGGGCCAGAAGAGAGGCTTGAGTGGCAAAATGCAGAAGCACCTGCCCATAAGCGTGTCGGACAGTGACCGGCTGCCGCTGCAGATTTGCGCCGTGTGCGCCACGTACCTGGACGTGTGGCACGAACTGTCCAGGTGCTGCGCCCTGACGGAGCTGCGCCTGCAGGAGCTCGTGGCCAAGGAGGAGCTCGAAGAGAGCAATAAGaaaataatAGAAACCGGTTTGGAGTGTCTGAACACGCCTGAATTTGTGTCTGCTTTTGGAGTCGAGCGGGACACCGTCCAAGCGAAAAATAAGTCGGCGGAAAAGTCGATGATCAAAGTGGTGGTCGTTCGACTCAACAACTCGGAAGAGATCTCAAACGCTTTGTCCAAATTAGAGGAAAACCCTTGCTCGCCGTGCGCGTCGGACAGTCGCGACCTGTTCCGGTGCACGGAGTGCAACGAGGACATCCAGGGGATCGAGGCGGCGGCCAAGCACCAGCGGGAGGTGCACGCGATCGACATGCTGCTGTGCCAGTGGTGCAAGGAGCCGTTCgactcgcagcagcagctgcaggCGCACCAGCTGGAGAAGCACCTGGCCGAGTGCCTCAAGGTGACCAACGTGGCCGAGATCCAGCTGCTGCACGAGGGCGCCATGAAGGTGTCCAAGGAGTTCGACCAGATGGACAAGTCGCTGCAGAACAAAATCGTGGACGCCATCCAGGCCATGGTCGGCAAGCAGCCGGCGCTCacgcaccagcagcagcagcagcagcagccggcggTCGACTTCATCTGCCACTACTGCCAACTTAGTTTCCTCACCAAGAGGATGCTCTCCAGGCACATCACCGAACACTCCGAGTACAAGGCCTTCAGgTGCACCGAGTGCATGAAAGGGTACAGCACGAAGGTGGGCTACGCGCTGCACATGCGCAAGCACACGGAGGAGAAGCCGATCAGCTGTCCCGAGTGCGGCAAGACGTTCAAGCACACCTCGAACCTGAAGGCGCACCAGAAGTCTCATTTGCCCGACGAGCAGAAGAAGCGGTTCAAGTGTCCGCTGTGCGAGAAGAAATTCCGCTGCCAGTTCCTCGTCGACGAGCACATGCGAATCCACACCGGCGAACGGCCCTACTCGTGCCACGTTTGTCCAAAGTTGTTCCACCGCAAGCAGCAGCTCTCGCAGCACCTGCTCGTCCACAGAACCGATCTCACCTTCGAGTGCCACCTCTGCGGCTCAAGGTTTAACCGGAAGGGAAATTTGACTGAGCACATGAAGAAGCACGTGAGCAAGAACAAGTACTCGTGCAAAATCTGCAAGGAGGCGTTCGACAGCGTGAGCGAGGTGGTGGCGCACCGCAAGCGCCACTCGACCGAGGAACTGGCCCAGTCAAAGTCTGAGACGCGCACTCGCAACACGGAAATCAAGTTCGAGTGCGAGTTCTGCAAAAAGCAGCTGGCCACCAAGGTCTCCCTGACGGCCCACCTGCGCATCCACACCGGAGAAAAACCCTTCGAGTGCGACGCCTGCGGAAaaaaaTTTTCGCAGAAGCCGGCGCTAACGTATCACAAAAAGCTGCATTCTGGAGAAAAACCGTTCCGCTGCGCCTACTGCGACGAGGGGTTCGTCACGAAAACTGCGAAGGCGATTCACGAACGCATCCACACGAACGAAAAACCCTACTCGTGCCAGTACTGCGGCGCCTCATTCCGAGGATCTGGAAGTCTCAACCAGCACATGACCGTGCACAGCGAGGAGAGAAGGTTCAAATGCAGCCACTGCACCCGCTCCTTCCACAGGAAAGAGGCGTTGCAAATCCACGAGCGGATCCACACGGGTTTCAAGCCGTACGTGTGCGACATCTGCGGGCGGCCCTTCACGCAGAGGGGCGACCTGACGAAACACAAGACGACCCACTCGAAGAGCAGCCGGCAGCACTCGTGTCGGCTGTGCGTGTTCGTGTGCACCAACCGCAAGGAGATGAAGAAGCACGAGGCGACGCACGCCGCCGATGACGACGTGCTGGTCGCCGAGAACCTCATCTCCTTCCCAGAGATAGCAATAGAACAAGACTGCGAGATGATGCTCGACGAGGGAGTCATGCAAGTAGATCTAAACCCAATTAAACTCGCTTAG
Protein Sequence
MNWSTPGLPGALVVRSYSIQRAFQFANRRKGLGISAPDSSASPPLVIQMKRFAVPNCSSSDENIDSTANFRLYNDPPFCEPQVEIHISAGEEIHDENSMPIFEVSVSDEFEDVAEDEEEQIKLCSRLANFFAQSKVESGSKCSELCRICGVKRKEMVGIFSDEGQKRGLSGKMQKHLPISVSDSDRLPLQICAVCATYLDVWHELSRCCALTELRLQELVAKEELEESNKKIIETGLECLNTPEFVSAFGVERDTVQAKNKSAEKSMIKVVVVRLNNSEEISNALSKLEENPCSPCASDSRDLFRCTECNEDIQGIEAAAKHQREVHAIDMLLCQWCKEPFDSQQQLQAHQLEKHLAECLKVTNVAEIQLLHEGAMKVSKEFDQMDKSLQNKIVDAIQAMVGKQPALTHQQQQQQQPAVDFICHYCQLSFLTKRMLSRHITEHSEYKAFRCTECMKGYSTKVGYALHMRKHTEEKPISCPECGKTFKHTSNLKAHQKSHLPDEQKKRFKCPLCEKKFRCQFLVDEHMRIHTGERPYSCHVCPKLFHRKQQLSQHLLVHRTDLTFECHLCGSRFNRKGNLTEHMKKHVSKNKYSCKICKEAFDSVSEVVAHRKRHSTEELAQSKSETRTRNTEIKFECEFCKKQLATKVSLTAHLRIHTGEKPFECDACGKKFSQKPALTYHKKLHSGEKPFRCAYCDEGFVTKTAKAIHERIHTNEKPYSCQYCGASFRGSGSLNQHMTVHSEERRFKCSHCTRSFHRKEALQIHERIHTGFKPYVCDICGRPFTQRGDLTKHKTTHSKSSRQHSCRLCVFVCTNRKEMKKHEATHAADDDVLVAENLISFPEIAIEQDCEMMLDEGVMQVDLNPIKLA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-